Actinosynnema mirum: Amir_4790
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Entry
Amir_4790 CDS
T00957
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ami
Actinosynnema mirum
Brite
KEGG Orthology (KO) [BR:
ami00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ami03032
]
Amir_4790
03400 DNA repair and recombination proteins [BR:
ami03400
]
Amir_4790
Enzymes [BR:
ami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Amir_4790
DNA replication proteins [BR:
ami03032
]
Prokaryotic type
DNA Topoisomerases
Amir_4790
DNA repair and recombination proteins [BR:
ami03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Amir_4790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
ACU38618
UniProt:
C6WPB6
LinkDB
All DBs
Position
complement(5705681..5706631)
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AA seq
316 aa
AA seq
DB search
MRLRRSTPGGPGFGRRRRGGGFGYADQDGARLTDAEHLARIKALVIPPAWRQVWISPHHN
GHIQAVGVDEAGRRQYLYHEAWRRERDEEKHARVLALAPLLPEFRARIARDLRGRDRALP
LALTLLERGAFRVGGESYAEDNGSHGVATLLCSHVTVRGSAVDFRYPAKSGVRFTATVED
DAVARTVRLLLRGRKRRDRLLVRKDGGQVRSDDVNVRFKELVGEEFSVKDLRTWHATVVA
ARAFAAAGDPGAERGRRRVEAEVMREVALRLGNTPAVARKSYVDPRLVELFRAGKVLRVR
GKGREAEELAVLRLLR
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
gtgagactgcgccgcagcacccccggcgggccgggtttcggacgacgtcgccggggcggc
gggttcgggtacgccgaccaggacggcgcccgcctgaccgacgccgagcacctggcccgg
atcaaggcgctggtgatcccgcccgcctggcggcaggtgtggatctcgccgcaccacaac
gggcacatccaggccgttggcgtggacgaggcaggccgcaggcagtacctgtaccacgag
gcgtggcggcgcgagcgcgacgaggagaagcacgcgcgcgtcctcgcgctggccccgctg
ctgccggagttccgcgcgcggatcgcccgcgacctgcgcggccgggaccgggcgctgccg
ctcgcgctcaccctgctggagcggggcgcgttccgggtcggcggggagagctacgcggag
gacaacggctcgcacggcgtcgcgaccctgctgtgctcgcacgtcaccgtgcgcgggtcc
gcggtggacttccggtacccggccaagagcggcgtccggttcaccgcgacggtcgaggac
gacgccgtcgcgcgcacggtgcgcctgctgctgcgcggccggaagcggcgggaccggctg
ctggtgcgcaaggacggcgggcaggtgcgctcggacgacgtcaacgtgcggttcaaggag
ctggtgggcgaggagttctcggtgaaggacctgcggacctggcacgccacggtcgtcgcg
gcccgcgcgttcgcggcggccggtgatccgggcgccgagcgcggtcggcggcgggtggag
gccgaggtgatgcgggaggtcgcgctgcgcctggggaacacgcccgccgtcgcccgaaag
tcctatgtggaccccaggctggtggagctgttccgggccgggaaggtgctgcgggtgcgc
gggaaggggcgggaggccgaggagctcgccgtgctgcggctgctgcgctga
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integrated database retrieval system
