Actinosynnema mirum: Amir_5549
Help
Entry
Amir_5549 CDS
T00957
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ami
Actinosynnema mirum
Pathway
ami03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ami00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Amir_5549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ami03019
]
Amir_5549
03400 DNA repair and recombination proteins [BR:
ami03400
]
Amir_5549
Enzymes [BR:
ami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Amir_5549
Messenger RNA biogenesis [BR:
ami03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Amir_5549
DNA repair and recombination proteins [BR:
ami03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Amir_5549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
DUF2284
Motif
Other DBs
NCBI-ProteinID:
ACU39367
UniProt:
C6WB76
LinkDB
All DBs
Position
complement(6588700..6590520)
Genome browser
AA seq
606 aa
AA seq
DB search
MASSDAGEVLRRVFGYESFRGDQGEIVEHVIGGGDALVLMPTGGGKSLCYQIPSLVRSGV
GVVISPLIALMQDQVDALRDVGVRAGFLNSTQFPDERQLVESEFLAGELDLLYLAPERLR
LDATTRLLERGDVALFAIDEAHCVAQWGHDFRPDYLALSHLKERWPDVPRIALTATATKA
THAEIATRLGLEDAKHFVASFDRPNIQYRIVPKNEPKKQLLKLLRDEHAGDSGIVYCLSR
NSTEKTAEFLVDNGIAALPYHAGLDAGTRAANQSRFLREDGLVMVATIAFGMGIDKPDVR
FVAHLDLPKSVEGYYQETGRAGRDGQPSTAWLAYGLQDVVQQRKMIEDSQGDQEHRRRQA
QHLDAMLSLCEAVDCRRARLLEYFGQSGEPCGNCDTCLAPPETWDGTVPAQKVLSTIVRL
KRERRQKFGAGQIIDILLGRKTAKVIQFDHDSLSVFGIGEELNESGWRAVVRQLLAQGLL
AVEGEYSTLTTTPGSDEVLFQGRKVLMRRQPERVEKVRTARGSGKQRADQLELSPEQEEV
FESLRTWRAATAKEQGVPAYVIFHDATLRQIASTAPSTLDALGGISGVGENKLAKYGQQI
IDTLNP
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagcgacgcgggtgaggtcctgcggagggtcttcgggtacgagtctttccgc
ggtgaccagggcgagatcgtcgagcacgtcatcggtggcggcgacgcgctcgtcctcatg
cccaccggcggcggcaagtcgctctgctaccagatcccctccctggtcaggtccggtgtc
ggggtcgtcatctcgccgctgatcgcgctcatgcaggaccaggtcgacgccctgcgcgac
gtcggcgtgcgcgcgggcttcctcaactccacccagttccccgacgagcgccagctcgtg
gagtccgagttcctcgcgggcgagctggacctgctctacctcgcccccgagcgcctgcgc
ctggacgccacgacccgcctgctggagcgcggcgacgtcgcgctgttcgcgatcgacgag
gcgcactgcgtcgcccagtggggccacgacttccgccccgactacctggccctgtcgcac
ctcaaggagcgctggccggacgtcccgcgcatcgccctcaccgcgaccgccaccaaggcc
acccacgccgagatcgccacccggctcggcctggaggacgccaagcacttcgtcgccagc
ttcgaccgccccaacatccagtaccggatcgtccccaagaacgagccgaagaagcagctc
ctcaagctcctgcgcgacgagcacgcgggcgactccggcatcgtctactgcctgtcccgc
aactccacggagaagaccgcggagttcctggtggacaacgggatcgcggccctgccctac
cacgcgggcctggacgcgggcacgcgcgcggccaaccagtcgcggttcctgcgcgaggac
ggcctggtcatggtcgcgaccatcgcgttcggcatgggcatcgacaagccggacgtccgg
ttcgtcgcgcacctggacctgccgaagtccgtcgagggctactaccaggagacgggtcgc
gcgggccgcgacggtcagccgtccacggcgtggctcgcgtacgggctgcaggacgtggtg
cagcagcgcaagatgatcgaggactcgcagggcgaccaggagcaccgccgccgccaggct
cagcacctggacgcgatgctgtcgctgtgcgaggccgtcgactgccgccgcgcgcgactg
ctggagtacttcggccagagcggcgagccgtgcggcaactgcgacacctgcctcgccccg
ccggagacgtgggacggcacggtgcccgcgcagaaggtgctgtccacgatcgtccggctc
aagcgcgagcgcaggcagaagttcggcgcgggccagatcatcgacatcctgctcggccgc
aagaccgcgaaggtcatccagttcgaccacgactcgctgtcggtgttcggcatcggcgag
gagctgaacgagagcgggtggcgcgcggtcgtgcggcagctgctcgcgcagggcctgctg
gcggtggagggcgagtactcgacgctgaccaccacgccgggtagcgacgaggtgctgttc
cagggccgcaaggtgctgatgcgccgccagccggagcgggtcgagaaggtccgcacggcg
cgcggcagcggcaagcagcgcgcggaccagctggagctgtcgccggagcaggaggaggtc
ttcgagagcctgcggacctggcgcgcggccacggcgaaggagcagggcgtgcccgcgtac
gtgatcttccacgacgccacgctgcgccagatcgcgagcaccgcgccgagcacgctggac
gcgctgggcggcatcagcggggtcggtgagaacaagctcgcgaagtacggccagcagatc
atcgacaccctgaacccgtga
DBGET
integrated database retrieval system
