Actinosynnema mirum: Amir_5962
Help
Entry
Amir_5962 CDS
T00957
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ami
Actinosynnema mirum
Pathway
ami03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Amir_5962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ami03400
]
Amir_5962
Enzymes [BR:
ami01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Amir_5962
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Amir_5962
DNA repair and recombination proteins [BR:
ami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Amir_5962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
TackOD1
FlhC
Auto_anti-p27
Helicase_PWI
Motif
Other DBs
NCBI-ProteinID:
ACU39770
UniProt:
C6WEZ5
LinkDB
All DBs
Position
complement(7008410..7009285)
Genome browser
AA seq
291 aa
AA seq
DB search
MPELPEVEVVRRGLHEHVTGRTVASVEVLHARAIRRHLPGAADFAVRLTGQRMDAARRRG
KYLWVDLSGGEAVLAHLGMSGQMLVQPVGAPDEKHLRVRVVFEDDGPELRFVDQRTFGGL
ALDELVEVDGTWLPRQVSHIARDPMDPEFDADAAVRALRSRKTDVKRALLDQTLVSGVGN
IYADESLWRARLHGLRPTAKLTTAKTAELLGHATQVMLEALGQGGTSFDALYVNVNGQSG
YFDRSLAVYGQEDRPCARCGTAIVREPFMNRSSYSCPRCQPRPRDAKTVAR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctgcccgaggtcgaagtagtccgccgagggctgcacgagcacgtcaccggc
cgcaccgtcgcctccgtcgaggtgctgcacgcccgagcgatccgccgtcacctccctggg
gcggcggatttcgccgttcggctgaccggtcagcgcatggacgcggcgcgcaggcgcggc
aagtacctgtgggtcgacctgtccggcggcgaggcggtgctcgcgcacctcgggatgagc
gggcagatgctcgtccagccggtcggggcgcccgacgagaagcacctgcgggtccgggtc
gtgttcgaggacgatggcccggagctgcggttcgtggaccagcggacgttcggcgggctc
gcgctggacgagctggtggaggtcgacgggacctggttgccccggcaggtctcgcacatc
gcccgcgatccgatggacccggagttcgacgccgacgcggccgtgcgggcgctgcggtcg
cggaagacggacgtgaagcgggcgctgctcgaccagacgctcgtgtccggggtcgggaac
atctacgccgacgagtcgttgtggcgcgcccggctgcacgggttgcggcccacggccaag
ctgaccaccgccaagaccgccgagctgctcgggcacgccacgcaggtgatgctggaggcg
ctcgggcagggcgggacgtcgttcgacgcgctgtacgtcaacgtgaacgggcagtcgggg
tacttcgaccggtcgctcgcggtgtacgggcaggaggaccggccgtgcgcgcggtgcggg
acggcgatcgtgcgggagccgttcatgaaccggtcctcgtactcgtgcccccggtgccag
ccccggcctagggacgccaagaccgtcgcccgttag
DBGET
integrated database retrieval system
