Actinosynnema mirum: Amir_6626
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Entry
Amir_6626 CDS
T00957
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ami
Actinosynnema mirum
Pathway
ami03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ami00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Amir_6626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ami03021
]
Amir_6626
03400 DNA repair and recombination proteins [BR:
ami03400
]
Amir_6626
Enzymes [BR:
ami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Amir_6626
Transcription machinery [BR:
ami03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Amir_6626
DNA repair and recombination proteins [BR:
ami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Amir_6626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ACU40423
UniProt:
C6WN59
LinkDB
All DBs
Position
complement(7756765..7760661)
Genome browser
AA seq
1298 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVGVNAELRHTDQPTLDSEMQVERKRVENRRDADVEARAQKLEAD
LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAQRELDRLDEIWSTFVKLERAQLIADEQL
YRELYDRYGDYFTGAMGAEAIQKLLGDYDVDAEAEVLRETIRSGKGQKKLRALKRLKVVA
AFQATRNNPQGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PAVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAMPRLDMVTGLYHLTWHKEDDLGEGQ
AYSSPAEAQMAFDRKALGLQAMCKIRITDKNPPRGQEPEGWEPGQPWLAETTLGRVLFNE
VLPQDYPFLNEVMPKKRQATVINDLAERYPMVTVARTLDKLKDAGFHWATRSGVTVAISD
VLVPEAKQGILDEYEKLADAVEKRYQRGQLSYTERNNELVKVWTKATEDVAQVMEDNFPE
DNSIRKIVKSGAAGNMTQVRSLAGMRGLVTNPKGEYIPRPIKNSFREGLSVLEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIIREIDCGTTRGVGMTVGEVLSDRVGLHEFA
QTSVYARTLAEDITDKDGNLVLNRGDDLGDPALQTLVTNNVVRVKVRSVLTCESAVGVCA
SCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPRVQELF
EARVPKGKAPIADVDGRVRIEDGDRFWKITLIPDDGSEEILFEKLSKRQRLANTATGPLQ
DGDHVSVGQQLLEGTPDPHEVLRVMGPREAQLHLVQEVQKVYRAQGVAIHDKHIEVIVRQ
MLRRVTIIDSGATEFLPGSLVERADFESGNRQVVAEGGEPAAGRPVLMGITKASLATDSW
LSAASFQETTRVLTDAAINGRSDKLIGLKENVIIGKLIPAGTGINRYRNIQVQPTEEARA
AAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDYR
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctccgcatcggtctcgccaccgcggacgacatc
cgccagtggtccttcggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
ccggagaaggacggcttgttctgcgagaagatcttcggtcccaccagggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcgccgcgagcgcatgggccacatcgaactggccgcgccg
gtcacccacatctggtacttcaagggcgtccccagccggttgggctacctgctcgacctg
gcccccaaggacctcgagaagatcatctacttcgcggcctacgtcatcgtgggcgtcaac
gcggagctgcgccacaccgaccagcccacgctcgacagcgagatgcaggtcgagcgcaag
cgcgtcgagaaccgccgcgacgcggacgtcgaggcccgcgcgcagaagctggaagccgac
ctggccgagctggaggccgagggcgccaagtccgacgtccgccgcaaggtcaaggagggc
ggcgagcgcgagatgcgccagctccgcgaccgcgcccagcgcgagctggaccggctcgac
gagatctggagcacgttcgtcaagctggagcgcgcccagctcatcgccgacgagcagctc
taccgcgagctgtacgaccggtacggcgactacttcaccggcgccatgggcgccgaggcc
atccagaagctgctcggcgactacgacgtggacgccgaggccgaggtgctgcgcgagacc
atccgcagcggcaagggccagaagaagctccgcgccctcaagcgcctcaaggtcgtcgcc
gcgttccaggcgacccgcaacaacccgcagggcatggtcctggactgcgtcccggtcatc
ccgccggacctgcgccccatggtgcagctcgacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgtcgcggccgtccggtgaccggtccgggcaaccgcccgctcaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactccggccgctcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcgcccgc
cccgccgtgtgggacgtcctcgaagaggtcatcaccgagcacccggtgctgctcaaccgc
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctccacccgctcgtctgcgaggcgttcaacgccgacttcgacggcgaccag
atggccgtccacctgccgctgtccgccgaggcccaggccgaggcgcgcgtgctgatgctg
tcgtcgaacaacatcctctcgcccgcgtccggcaagccgctggccatgccgcgactggac
atggtgacgggtctgtaccacctgacctggcacaaggaggacgacctcggcgagggccag
gcgtactcctcgcccgccgaggcgcagatggcgttcgaccgcaaggcgctgggcctgcag
gcgatgtgcaagatccgcatcaccgacaagaacccgccgcgcggccaggagcccgagggc
tgggagcccggtcagccgtggctggccgagaccaccctcggccgggtgctgttcaacgag
gtcctgccgcaggactacccgttcctgaacgaggtcatgcccaagaagcggcaggccacg
gtcatcaacgacctcgccgagcggtacccgatggtcaccgtcgcccggacgctggacaag
ctgaaggacgccggcttccactgggccacccgctccggcgtgaccgtcgcgatctccgac
gtgctcgtccccgaggccaagcagggcatcctcgacgagtacgagaagctcgcggacgcg
gtggagaagcgctaccagcgcggtcagctgtcctacaccgagcgcaacaacgagctcgtc
aaggtgtggaccaaggcgaccgaggacgtcgcccaggtcatggaggacaacttccccgag
gacaactcgatccgcaagatcgtgaagtccggcgcggcgggcaacatgacccaggtccgc
tccctcgcgggtatgcgcggcctggtcacgaacccgaagggcgagtacatcccgcgcccg
atcaagaactcattccgcgagggcttgtcggtcctggagtacttcatcgccacgcacggc
gcccgcaagggtctggccgacaccgcgctccgcacggcggactcgggctacctgacccgt
cgtctggtggacgtctcgcaggacgtcatcatccgcgagatcgactgcggcaccacgcgc
ggcgtgggcatgaccgtgggcgaggtcctgagcgaccgcgtcggcctgcacgagttcgcg
cagaccagcgtgtacgcccggaccctggccgaggacatcaccgacaaggacggcaacctc
gtcctcaaccgcggtgacgacctgggcgacccggcgctccagaccctggtgaccaacaac
gtcgtccgggtgaaggtccgctccgtgctgacctgcgagtccgcggtcggcgtgtgcgcg
tcctgctacggccgctcgatggccaccggccagctggtcgacgtcggcgaggccgtcggc
atcgtcgccgcccagtcgatcggtgagcccggcacccagctgacgatgcgcaccttccac
cagggtggtgtggccggtgacgacatcaccaccggtctgccgcgtgtccaggagctgttc
gaggcccgcgtcccgaagggcaaggcgcccatcgccgacgtcgacggccgcgtgcggatc
gaggacggcgaccgcttctggaagatcaccctcatcccggacgacgggtccgaggagatc
ctcttcgagaagctctcgaagcgtcagcgcctggccaacacggccaccggcccgctgcag
gacggcgaccacgtgagcgtcggccagcagctgctggagggcacgcccgacccgcacgag
gtcctgcgggtcatgggtccgcgcgaggcccagctgcacctggtgcaggaggtccagaag
gtctaccgcgcccagggcgtggcgatccacgacaagcacatcgaggtcatcgtccggcag
atgctgcgccgggtcacgatcatcgactcgggtgcgacggagttcctgccgggctcgctg
gtcgagcgcgcggacttcgagtcgggcaaccgccaggtcgtggccgagggcggcgagccc
gccgccggtcgcccggtcctgatgggcatcacgaaggcgtcgctggccacggactcgtgg
ctgtcggcggcctccttccaggagacgacgcgcgtcctgaccgacgccgccatcaacggg
cggtcggacaagctgatcggcctgaaggagaacgtgatcatcggtaagctgatcccggcc
ggcaccggcatcaaccggtaccggaacatccaggtccagccgaccgaggaggcgcgcgcc
gccgcgtacgccatcccgagctacgacgacggctactacacgccggacgtgttcgggacc
ggcacgggcgccgcggttccgctggacgactacgacttcggtcgcgactaccgctga
DBGET
integrated database retrieval system
