Aminipila terrae: Ami3637_16075
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Entry
Ami3637_16075 CDS
T06414
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
amic
Aminipila terrae
Pathway
amic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ami3637_16075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amic03019
]
Ami3637_16075
Messenger RNA biogenesis [BR:
amic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ami3637_16075
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
QHI73691
UniProt:
A0A6P1MIY4
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Position
3340556..3342235
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AA seq
559 aa
AA seq
DB search
MRKRTNKKGGSPLRVIPIGGLNEIGKNMTVLEYKEDILIIDCGLSFPEDEMYGIDIVIPD
FTYIVKNKEKVKGMILTHGHEDHIGAIPYLLKQINVPIYGTRLTLGLVENKLKEHGIKAD
LNTVAHGDKVQLGAFNAEAIRSTHSVADAICWCIDTPVGRVFHTGDFKIDYTPIGGAPMD
FARLAELGSKGVQLMLCDSTNATRPGYSMSEQTVGITLENIFRNSEARIIIATFSSNVHR
VQRIIDNAVMVGRKVAISGRSMVNVVNIAMELGYLNVPANVLVDINKTKNIPDKELVIIT
TGSQGEPMSALARMASADHKAVSIKKGDMVILSSSPVPGNEKTVSNVVNKLFEKGAEVIY
SDIADIHVSGHACEEELKLMHSLIKPKFFMPVHGEYRHLKRHAQIAESLGKDPENIFILE
NGNILNVTANKAEIIKEEVPSQAVYVDGLGVGDVGNIVLRDRKLLSESGLIIVVAAIDKA
SGTICSGPDIISRGFVYVRENENLIEQARNLVANTLDKCCEENIKDWNALKSAVRDDLRS
FIYKQTKRSPVILPIFLEV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaagaacgaataaaaagggtggcagtccacttcgcgttattcctataggcgga
ttaaatgagatcggtaaaaacatgaccgttttggaatataaagaggatatactgattata
gactgtggactgtcctttccggaagacgaaatgtacggaatcgatatcgtaattcctgat
tttacttacattgtaaagaacaaagaaaaagtaaagggtatgatattaacacatggtcat
gaagaccatataggagctattccttaccttctaaagcaaataaatgttcctatttatgga
acaagattaactttagggttagtggaaaataagcttaaagaacatggaataaaggctgat
ttaaacacagtagctcatggagacaaggtccagctgggagcatttaatgcagaggccatc
aggagtacacattctgttgcagatgcaatctgttggtgtatagatactcctgtaggaaga
gtattccacactggagactttaagattgattatacacctataggcggagcacctatggat
tttgcaagacttgcagagcttggttccaaaggagtccagctgatgctctgcgatagtaca
aatgcaacacgacctggttattccatgtcagagcaaacggtaggcattacccttgaaaat
attttcaggaactctgaggcacgaattattattgctacattttcatcaaatgttcacaga
gtccagagaattattgacaatgcagtaatggttggccgtaaagttgcaatatccggtaga
agtatggttaacgtagtaaatattgccatggaacttggctatttaaacgtacctgccaat
gtgcttgtggatattaataaaacgaaaaatattccggataaagaacttgtaatcataact
accggaagtcagggtgaacctatgtctgctcttgccagaatggcctctgcagaccacaag
gcagtttccatcaaaaagggagatatggtaatcctttcttccagccctgttccaggaaat
gaaaaaaccgtttcaaacgttgtaaataaactttttgaaaaaggtgccgaagttatttat
tcagatatagcggatattcatgtttcaggccatgcctgtgaagaagaattaaaattaatg
cattctctgattaagccaaaattctttatgcctgtacatggggaataccgacatttgaaa
agacacgcacaaattgctgaaagtcttggtaaagaccctgaaaatatctttattttagaa
aatggcaatattcttaatgtaactgctaataaggcagaaatcattaaagaggaagtacct
tcacaggctgtatatgttgacgggcttggtgtaggggatgtaggaaatatagtacttcgt
gacagaaaacttctttctgaatcaggtcttatcatcgtagttgctgctattgataaagca
tctggtactatatgttccggtcctgatattatttccagagggtttgtttatgtaagagaa
aacgaaaatcttattgaacaggcaagaaatctggtagcaaatacacttgataaatgctgt
gaagaaaacattaaagattggaatgcgcttaaatcagcagtaagggacgatcttagaagc
tttatctataagcagacgaaaagaagccctgtaatactgcctatattcttggaggtatag
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