Aminobacter sp. MSH1: CO731_03307
Help
Entry
CO731_03307 CDS
T05420
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
amih
Aminobacter sp. MSH1
Pathway
amih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO731_03307 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amih03019
]
CO731_03307 (rnr)
03016 Transfer RNA biogenesis [BR:
amih03016
]
CO731_03307 (rnr)
Enzymes [BR:
amih01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CO731_03307 (rnr)
Messenger RNA biogenesis [BR:
amih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CO731_03307 (rnr)
Transfer RNA biogenesis [BR:
amih03016
]
Prokaryotic type
tRNA degradation factors
CO731_03307 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
Motif
Other DBs
NCBI-ProteinID:
AWC23834
LinkDB
All DBs
Position
complement(3336981..3339299)
Genome browser
AA seq
772 aa
AA seq
DB search
MARKISGRNAGTRRAASDEVRGKDVYRPSRDEILRYIAENPDRSGKRDIAKAFALKNEDR
IWLKELLRELQDEGLLEKSRKRLSRVGALPHVAVLDIFGRDTEGTLLARASEQPDGPIVA
VKTSRTSNGPTPGVGDRVLAKTFPVEGYLGDENVPAYTARIMKVFEKRSDTALGIFRILK
DGTFRIEPVERRQPELVVDKDSQNGAKDGDLVEVVPERASRYGLPRAKVVSVLGSLTNEK
AVSMIAIHAHEIPHIFPAEVIAEAEAVKPATLDGKREDWRELPLVTIDPADAKDHDDAVY
AEPDTDEKNPGGFIATVAIADVAAYVRPGTALDQEALKRGNSVYFPDRVVPMLPERISND
LCSLREGVDRPALAVRMTFSAEGRKVRHSFHRIMMRSSARLAYPQAQAAIDGVPDDKTGP
ILETILKPLWAAYDVLKRGRDSRQPLELDLPERKILLKPDGTVDRVIVPDRLDAHKLIEE
FMIQANVAAAETLENKKQKLVYRIHDGPSLAKQESLREFLQTIGLSLARGAEMRPAQFNG
ILERVRGEDNEQLVNEVVLRSQSQAEYNPDNIGHFGLNLRRYAHFTSPIRRYADLIVHRA
LIASLGLGAGGLTPSEEARLEEIAGLISQTERRAMAAERETVDRLVAGFLSERLDETFEA
RISGVVKAGLFVQLPQYGADGFIPVSSLGDDYYHFDEAARALFGERSGKGYQLADRVEVR
LVEIAPLAGAMRFEMLTEPKPLPGSKRSFHKTKGQRTRARASQPRRGPRGRR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
ttggcgcgaaagatttccggacgaaacgccggcaccagacgcgccgcaagcgacgaggtc
cgcggcaaggacgtctatcgcccctcgcgtgacgagattctgcgctacatcgcggagaat
cccgatcgcagcggcaagcgggacattgccaaggcctttgcgctcaagaacgaagaccgc
atctggctgaaagagctgttgcgcgaactccaggacgagggcctgctggagaagagccgc
aagcgcctgagccgggtcggcgccctgccccatgtcgccgtgctagacatcttcggtcgc
gacactgagggcacgctcctggcgcgtgcttccgaacaaccggacggtcccatcgttgcc
gtcaagacatcccgtacaagcaacggaccgacgcccggcgtcggcgaccgcgtgctggcg
aagaccttcccggtcgaggggtatctcggcgacgaaaacgtgccggcttataccgcccgt
atcatgaaggtgttcgaaaagcgcagcgataccgcgctcggcatcttccgcatcctcaag
gacggcacgttccgcatcgagccggtcgagcgccgccagcccgaactggtggtcgacaag
gactcccagaacggcgccaaggatggcgaccttgtggaagtggtcccggagcgcgccagc
cgatatgggctgccgcgcgccaaggtggtctcggtgcttggctcgctgaccaatgagaag
gcggtctcgatgatcgccatccatgcccacgagattccgcacatcttccctgccgaggtg
atcgccgaggctgaagcagtcaaaccggcgacgctcgacggcaagcgcgaggactggcgg
gagctgccgctggtcaccatagatccggcggacgccaaggaccatgacgacgccgtctat
gccgagccggatacggatgaaaagaaccccggcggctttatcgccaccgtcgccatcgcc
gacgtcgcggcctatgtccgccccggcaccgctctcgaccaagaggcactgaagcgcggc
aactcggtctatttccccgaccgcgtcgtgccgatgctacccgaacgcatctccaacgat
ttgtgctcgctgcgcgaaggcgtcgaccggccggcacttgccgtgcgcatgacgttttcg
gccgaaggccgcaaggtcaggcactccttccaccgcatcatgatgcgctcgtcggcccgc
ctcgcctatccgcaggcgcaggccgccatcgacggtgtgcccgacgacaagaccgggccg
atcctggagaccatcctcaagccactgtgggcggcctacgacgtgctcaagcgcggccgc
gacagccgccagccgctcgaactcgacctccccgaaagaaagatcctcctcaagcccgac
ggcacggttgaccgggtcatcgttcccgatcgcctcgacgcccacaagctgatcgaggag
ttcatgatccaggccaacgtcgcggcggccgagaccctggaaaacaaaaagcagaaactc
gtctaccgcatccatgacggcccctcgcttgccaagcaggaatcgctgcgcgagttcctg
caaacgatcggcctgtcattggcgcgtggcgccgagatgcggccagcccagttcaacgga
atcctcgagcgtgtgcgcggcgaggacaacgagcaactggtcaacgaagtggtgctgcgc
tcgcagagccaggccgagtacaatcccgacaatatcgggcacttcggcctcaatctgcgc
cgctacgcccatttcacctcgccgatccgccgctatgccgacctcatcgtccatcgtgcc
ctgatcgcctcgctgggcttgggcgccggtggcctgacgccgtcggaagaagcacgcctg
gaagaaatcgccggcctcatttcgcagaccgaacgccgcgccatggcagccgaaagggag
accgtcgatcggctggtcgccggcttcctgtccgaacggctcgacgagactttcgaggcc
cgcatctcgggcgtggtcaaggcgggactatttgtccaattgccgcaatatggcgcggat
ggtttcatccccgtgtcatccttgggtgacgattattaccacttcgacgaagccgcccgc
gccctcttcggggagcgcagcggcaagggctaccaactcgctgaccgcgttgaagtgcgg
cttgtcgagatcgccccgctggctggcgccatgcgcttcgaaatgctgaccgaaccgaag
cccctgcccggttcgaaacggtcgttccacaagaccaaggggcaaagaacgcgtgcccgt
gcctcccaaccgcggcgaggtccgcgcggcaggagatga
DBGET
integrated database retrieval system
