Aminobacter sp. MSH1: CO731_03585
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Entry
CO731_03585 CDS
T05420
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amih
Aminobacter sp. MSH1
Pathway
amih03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amih00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CO731_03585 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amih03021
]
CO731_03585 (rpoC)
03400 DNA repair and recombination proteins [BR:
amih03400
]
CO731_03585 (rpoC)
Enzymes [BR:
amih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CO731_03585 (rpoC)
Transcription machinery [BR:
amih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CO731_03585 (rpoC)
DNA repair and recombination proteins [BR:
amih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CO731_03585 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
DUF6744
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AWC24109
UniProt:
A0A2S0XM41
LinkDB
All DBs
Position
complement(3625809..3630005)
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVMNLFNPQAPAQVFDSIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDSFTA
MIGAEAIHDLLASMDLEKIAGDLRSELATTTSELKQKKYLKRLKVVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPASGAPIIVPSQDMVLGLYYLSIVNQNEPGEGMAFADMGELQHALE
TKAVTLHAKIKGRFRTVDAEGNVVSKIHDTTPGRMIIGELLPKNVNVPYETANQEMTKKN
ISKMIDTVYRHCGQKETVIFCDRIMALGFAHACRAGISFGKDDMLIPDTKHGLVEQTEAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCSEKVADEMMARIKAVEFEDNGRQKPMNSIYM
MSHSGARGSPTQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMQPIVDAGQVVASLGLRILGRTS
LDDINHPVTGDLLVKGGTLMDERDIEVIEKAGVQSVRIRSALTCEVKVGVCAVCYGRDLA
RGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDSSFLEASYEGKVEIRNRNV
VRNSDGNLVVMGRNMAILILDEAGKERATHRVTYGSRIFVDDGDKVKRGQRVAEWDPYTR
PILTEIEGRVAFEDLVDGISVQETADESTGITKREVIDWRSTPRGNDLKPAMVVQDSKGK
VGKLSKGGDARFLLSVEAILSVEPGAQVRPGDVLARIPMESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTVRFGRDYKNKRRIIIEPHDSTLEPVEYLIPKGKPFHLQDGDAIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVEI
TVQGDSIYIPGDHVDVIEFDEVNDRLIEEGKKPAEGQPVLLGITKASLQTPSFISAASFQ
ETTRVLTEAAVAGKTDMLQGLKENVIVGRLIPAGTGGMMSQIRRIATSRDELILDERRKL
SGVEVAEPILTDMVNAAQ
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatctcttcaaccctcaggcgcctgcgcaggtgttcgattcc
atccggatttcgctcgccagccctgagaagattctgtcctggtcgtttggcgagatcaaa
aagccggagacgatcaactatcgtaccttcaagccggagcgcgacggcctgttctgcgcg
cgcatcttcggcccgatcaaggactacgaatgcttgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgaaaagtgcggcgtggaagtcacgctgtcgcgcgttcgccgc
gagcgcatgggccacatcgagctcgcagcgcccgtcgcccacatctggttcctgaagtcg
ctgccgagccgcatcggcacgctgctcgacatgacgctcaaggatatcgagcgcgtcctg
tatttcgagaactacatcgttaccgagcctggcctgaccgcgctcaaggagcaccagctc
ctgagcgaggaagagtacatgcttgcggttgacgagtatggcgaggacagcttcaccgcc
atgatcggcgccgaggccatccacgacctgctcgccagcatggacctggagaagatcgcg
ggcgatctgcgttcggaactcgccacgacgacgtcggaactcaagcagaagaagtacctc
aagcgcctcaaggtcgttgagaacttcatggaatcgggcaaccgtcccgagtggatgatc
atgaaggtcgtgccggtgatcccgccggacctgcgcccgctggtcccgctggatggcggc
cgctttgcgacctccgacctgaacgatctctatcgccgcgtgatcaaccgcaacaaccgc
ttgaagcggctgatcgaactgcgtgcgcctggcatcatcatccgcaatgaaaagcgcatg
ctgcaggaggctgtcgacgcactgttcgacaacggccgccgcggtcgcgtcatcaccggt
gccaacaagcgcccgctgaagtcgctgtccgacatgctcaagggcaagcagggtcgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctacgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggtcgagaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctgctcaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgaa
cccactctgatcgaaggcaaggccatccagctgcatccgctcgtctgcacggccttcaac
gccgacttcgacggcgaccagatggctgtccacgttccgctgtcgctcgaggctcagctc
gaagcacgcgtgctgatgatgtcgaccaacaacatcctgcacccggcttccggcgcgccg
atcatcgtgccgtcgcaggacatggttctgggtctctactatctttcgatcgtcaaccag
aacgagccgggcgagggcatggcgtttgccgacatgggcgaactccagcacgcgcttgag
accaaggcagtcaccctgcacgccaagatcaagggtcgcttccgcacggtcgacgccgaa
ggcaatgtcgtatccaagatccacgacacgaccccggggcgcatgatcatcggcgaactt
ctgccgaagaacgtcaacgtgccgtacgagaccgcaaaccaggagatgaccaagaagaac
atctccaagatgatcgataccgtctaccgccactgcggtcagaaagagacggtcatcttc
tgcgatcgcatcatggctctcggcttcgctcacgcctgccgcgccggcatctcgttcggc
aaggacgacatgctcatccctgatacgaagcacggactggtcgaacagaccgaagcgctc
gccaaggaatatgagcagcagtacaacgacggcctgatcacccagggcgagaagtacaac
aaggtcgtcgacgcctgggccaagtgctcggaaaaggtcgccgacgaaatgatggcccgc
atcaaggcggtggagttcgaggacaacggccgtcagaagccgatgaactcgatctacatg
atgtcgcactccggtgcgcgtggttcgcccacccagatgcgtcagctcgccggcatgcgc
ggcctaatggccaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgaccgttcttgaatacttcaactcgacccacggcgcccgcaagggtctcgcg
gataccgctctgaagacggctaactccggctacctgacccgtcgtctcgtcgacgtggca
caggactgcatcgtcaattcggttgattgcggcaccgacaagggcctcaccatgcagccg
atcgtcgatgccggccaggtggtcgcttcgctcggtctccgtatcctcggccgtacttcg
ctcgacgacatcaaccaccctgtcaccggcgatctgctggtcaagggcggcacgctgatg
gacgaacgcgacatcgaggtgatcgagaaggctggcgtgcagtcggtccgcatccgttcg
gcactgacctgcgaagtcaaggtcggcgtctgcgcggtctgctacggtcgcgacctggca
cgcggtacccctgtcaaccagggtgaagctgtcggtgtcatcgccgcacagtcgatcggc
gagcctggcacgcagctcaccatgcgtaccttccacatgggcggtaccgcgcaggtggtc
gacagctcgttcctcgaagcttcgtatgaaggcaaggtcgagatccgcaaccgcaacgtc
gtccgcaattccgacggcaacctcgtcgtgatgggccgcaacatggcgatcctgatcctc
gacgaagccggcaaggagcgtgcgacgcaccgtgtcacctatggttcgcgtatcttcgtg
gacgatggcgacaaggtgaagcgcggccagcgtgttgcagagtgggatccctacacccgt
ccgatcctcaccgaaatcgaaggccgcgtggccttcgaggatctggtcgacggcatttcc
gttcaggaaacggccgacgagtcgaccggcatcaccaagcgtgaggtcatcgattggcgt
tcgaccccgcgcggcaacgatctgaagcccgcgatggtcgttcaggactccaagggtaag
gttggcaagctgtcgaagggcggcgacgcccgcttcctgctctcggtcgaggccattctt
tcggtcgagccgggtgcgcaggttcgccctggcgacgtgctggcgcgtatcccgatggaa
agcgcgaagaccaaggacatcaccggcggtctgccgcgtgttgccgaactcttcgaagcc
cgccgaccgaaggatcacgccatcatcgccgagatcgatggtacggtccgcttcggccgc
gactacaagaacaagcgccgcatcatcatcgagccgcatgactcgacgcttgagccggtc
gaatacctgatcccgaagggcaagccgttccatctccaggacggcgacgcgatcgagaag
ggcgactacatcctcgacggcaatccggcgccgcacgacatcctggcgatcaagggcgtg
gaagcgcttgcttcctacctcgtcaacgaaatccaggaagtctaccggttgcagggcgtg
tcgatcaacgacaagcacatcgaggtcatcgtccgtcagatgctgcagaaggtcgagatc
accgtacagggcgactcgatctacatcccgggcgatcatgtcgacgtcatcgagttcgac
gaggtcaacgatcgcctgatcgaggagggcaagaagcctgccgaaggtcagccggttctg
ctcggtatcaccaaggcatcgctgcagacgccgtccttcatctcggccgcctccttccag
gagacgaccagggtgctgacggaagctgcggtcgccggcaagaccgacatgctgcagggt
ctcaaggaaaacgtcatcgtcggccgtctcatcccggccggcacgggcggcatgatgagc
cagatccggcgcattgccacctcgcgcgacgaactgatcctcgacgagcgccgcaagctt
tcgggcgtggaagtcgccgagccgatcctgaccgacatggtcaacgccgctcagtaa
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integrated database retrieval system
