Aminobacter sp. MSH1: CO731_03619
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Entry
CO731_03619 CDS
T05420
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amih
Aminobacter sp. MSH1
Pathway
amih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO731_03619 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amih03019
]
CO731_03619 (rne)
03009 Ribosome biogenesis [BR:
amih03009
]
CO731_03619 (rne)
Enzymes [BR:
amih01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CO731_03619 (rne)
Messenger RNA biogenesis [BR:
amih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CO731_03619 (rne)
Ribosome biogenesis [BR:
amih03009
]
Prokaryotic type
rRNA processing factors
CO731_03619 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AWC24139
UniProt:
A0A2S0XM68
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All DBs
Position
3661742..3664699
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AA seq
985 aa
AA seq
DB search
MPNKMLIDASHPEETRVVVVRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAEEAEDEEDEENEGDESKGQDRNRGRR
RRRGGKNRGRNGDEQKPEGAGDDEGSHSEDDGEPIAAASDDDGDSIATSESAETHSDESE
TAADDSDEREPTSIAASFDADVVSERVPEPTVTENENGGVIEEVHSSHHDDHEVESVGAE
DALEEVRNRRKPVRRHYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMP
NTARGGGISRKITNAQDRKRLKEVVADLEVPKGMGVILRTAGESRTKAEIKRDYEYLMRL
WENVRSLTLQSTAPALVYEEGSLIKRSVRDLYNKDIDEVLVAGEDGYREAKDFMRMLMPS
HAKVVQPYRDITPIFVRSGIESQLERMVQPQVTLKSGGYIIINQTEALVAIDVNSGRSTK
EHSIEETALHTNLEAAEEVARQLRLRDLAGLIVIDFIDMEENRNNRAVEKKLKDCLKNDR
ARIQVGRISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGHVRSDSSVALQVVRAIEEFL
LKDSRSHITVKTPAATALYVLNHKRSTLVDLEARFGVTITIEADDSVGSQNHAIFRGAIA
EKPASFSLPVIAPAYEEPEEVEDEIVAEEEEEATAVAAAEVQPARAAQPAGEGEQHDRKR
RKRRRRRGGRDREHGAPHDAATVASEADASEDEEAGSDAEIESGAEVEVASEATSADAAA
TDEAAAKKRRRGKRGGKRNRKEDDELSAEGDEQPASEDAVVEPSVNEAPVAEAAAVAAVA
EEPEAAAEAKPKKAPRRSAKAKKAEAEAIEAPATEPVAEAVAAEIAVDAAAPESEAKPAK
KPAKPRAPRRKAAAAPAEQEVIAAEAEQEAVAAPAEQEVVAKAVAARPTKAPAAPVVTSA
VDAEDDASSEAKPKKGGWWQRKGFF
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgctgatagacgcctcccacccggaggaaacacgggttgtcgtagtt
cgcggtaaccgcattgaagaatttgatttcgaatcacaggacaaaaagcagctcaaagga
aatatctacctcgcccgcgtaacgcgggttgaaccgtcccttcaggctgcctttgtcgaa
tatggcgggaaccgtcacggtttcctcgccttcagcgaaatccatcccgactattaccag
atcccggttgccgatcggcaggcgctgctgcgcgccgaggcggaagaagccgaggacgag
gaagacgaagagaacgaaggcgacgagagcaagggccaggaccgcaaccgcggacgccgc
cgccgccgcggtggcaagaaccgtggccgcaatggcgacgagcagaagcccgaaggagcc
ggcgacgacgagggctcccattcggaggacgacggcgagcctatcgctgccgcatccgac
gacgacggcgattcgattgccacaagcgaatctgcggagacgcacagcgacgaatcggaa
acggcagccgacgattcggacgagcgtgagccgacatcgatcgccgcgtcgttcgacgcc
gatgtggtatccgaacgggtgcctgaaccgaccgtcaccgaaaacgaaaacggcggcgtg
atcgaggaagttcactcgtcccatcacgacgaccatgaagtcgagtcggtcggcgcggaa
gacgccctcgaagaggtgcgcaatcgccgcaagccggttcgccgccactacaagatccag
gaagtcatcaagcgccgccagattcttctggtccaggtggtcaaggaagagcgcggcaac
aagggtgcagcgctcacgacctatctgtcgctggccggccgctattcggtgctgatgccc
aatacggcgcgcggcggtggcatttcacgcaagatcaccaatgcccaggaccgcaagcgc
ctgaaggaagtggttgccgatctggaagtgccgaagggcatgggcgtcatcctgcgcacc
gcaggtgaaagccgtaccaaggccgagatcaagcgcgactacgaatatctgatgcgcctg
tgggagaacgtccgcagcctgacgctgcagtcgacggcacccgcactggtctatgaggaa
ggcagcctgatcaagcgatcggtgcgcgacctctacaacaaggacatcgacgaggttctc
gtcgccggcgaagacggctaccgagaggccaaggacttcatgcgcatgctgatgcccagc
catgccaaggtcgtccagccttaccgcgacatcacgccgatcttcgtgcgtagcggcatc
gaatcgcagctcgaacggatggtccagccacaggtgacgctgaagtcgggtggctacatc
atcatcaaccagaccgaggcgctggttgccatcgacgtcaactccgggcgctccaccaag
gaacactcgatcgaggagacggcacttcacaccaaccttgaagccgccgaggaagtcgcg
cgccagctcaggctgcgagaccttgccggcctgatcgtcatcgacttcatcgacatggag
gagaaccgcaacaaccgtgcggtcgagaagaagctcaaggattgcctgaagaacgaccgc
gcccgtatccaggtcggccggatctcgcatttcggcctgatggagatgtcgcgccagcgc
atccgcgccagcgtgctggaatcgacgatgaagccctgcccgcattgcggcggtaccggc
catgtgcgttcggactcctcggtggcactccaggtcgtgcgcgccatcgaagaattcctg
ctcaaggattcgcgcagccacatcaccgtcaagacgcctgcggcgaccgcactctacgtg
ctcaaccacaagcgctccacgctggtggacctcgaagcccgcttcggcgtgacgatcacg
atcgaggccgacgacagcgtcggctcgcagaaccatgccatcttccgcggcgccatcgcc
gagaagccggcgagcttcagcttgccggtgatcgcgccggcctatgaagagccggaagag
gtcgaagacgagatcgtcgccgaagaggaagaagaggcaacagccgtcgccgccgccgaa
gtgcagccggcccgcgcagcccagccagcaggcgaaggcgaacagcacgaccgcaagcgg
cgcaagcgccggcgtcgtcgcggcggccgcgaccgcgagcatggcgcaccgcacgacgca
gccaccgtcgcctcggaagccgacgcctccgaggatgaggaggccggttccgatgccgag
atcgagagcggtgcggaagtggaagtcgcttctgaagcaacaagcgcagacgctgccgcg
accgatgaggccgcggccaagaagcgccggcgcggcaagcgcggcggcaagcgcaaccgc
aaggaggacgacgagctctcggcagaaggcgacgaacagccagcatccgaagatgcggtt
gtcgagcccagcgtaaacgaagcgccggtcgccgaagccgcagcagtcgcagctgtggct
gaagaaccggaagccgccgccgaagccaagccgaaaaaggcaccgcgccgttcggccaag
gccaagaaggcggaggccgaggcaatcgaggcgccggcaactgagccggttgcagaagct
gtggcggctgaaattgccgtagatgcggcagctcccgagtccgaagccaagccggcgaag
aaaccagcgaagccccgtgcgccgcgccgcaaggctgccgctgctccagccgagcaagag
gtgattgccgctgaagccgagcaagaggcggttgccgctccggccgagcaagaggttgtt
gccaaggcagttgctgcacgtccgacgaaggcgccggccgcaccggtagtcacttcggca
gtcgatgccgaggacgacgcttcgagcgaagccaagccgaaaaaaggtggctggtggcag
cgcaaaggtttcttttga
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