Aminobacter sp. MSH1: CO731_03657
Help
Entry
CO731_03657 CDS
T05420
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
amih
Aminobacter sp. MSH1
Pathway
amih03030
DNA replication
amih03430
Mismatch repair
amih03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CO731_03657 (dnaE1)
03430 Mismatch repair
CO731_03657 (dnaE1)
03440 Homologous recombination
CO731_03657 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amih03032
]
CO731_03657 (dnaE1)
03400 DNA repair and recombination proteins [BR:
amih03400
]
CO731_03657 (dnaE1)
Enzymes [BR:
amih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CO731_03657 (dnaE1)
DNA replication proteins [BR:
amih03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CO731_03657 (dnaE1)
DNA repair and recombination proteins [BR:
amih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CO731_03657 (dnaE1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
McdB_C
DUF655
T2SSK
Motif
Other DBs
NCBI-ProteinID:
AWC24177
LinkDB
All DBs
Position
complement(3699645..3703175)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSSERLPRDPLKREALKAEAKPEASARTFIHLRVHSAYSLLEGALPLGKVVGHAVKDAAP
AIAVADSNNLFGALEFAQKATKDGVQPLVGCQVDVDFAETADSGQRGPVFKQALDLLPIV
LIAATEAGYANLVRLVSRLYLETPNGEPVHAKLDWVSGLADGIICLTGGPRGPIGTAIRS
DHQVLAEARLLGLQAMFGDRLYVELERVAGYDRGVEAATIELAYRHRLPLVATNEAFFPT
RADYEAHDALIAIAEGSVVAEDNRRRLTPDNFLKSQKEMSELFADLPEAIDNTVEIARRC
SYYPKNRNPILPRFTGGDIADADAAVAAEAAELTRQAHDGLAMRLETRGLAEGYTPEQYK
ERLEYELGIIERMKFPGYFLIVADFIKWAKVQGIPVGPGRGSGAGSLVAYALTITDVDPL
RFSLLFERFLNPDRVSMPDFDIDFCQDRREEVIRYVQAKYGRDQVGQIITFGTLQARAVL
RDVGRVLQMPYGQVDKLCKMVPQNPANPVTLGQAIEGEPRFAEEAEREPIVQTLLDMAQK
LEGLYRHASTHAAGIVIGDRPLSELVPMYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLK
TLTVLQKALQFISRRGVDIDLALIPLDDPLTYAMLSRGETVGIFQVESAGMRKALIGMKP
DRVEDIIALVALYRPGPMENIPTYNARKHGDEEIASIHPMIDHLVKETQGVIVYQEQVMQ
IAQELSGYSLGEADLLRRAMGKKIRAEMDKQRERFVTGSMEKGVSKPQSNAIFDLLAKFA
DYGFNKSHAAAYAIVSYQTAYLKAHYPVEFLAASMTYDMSNTDKLNDFRQDAMRLGIDVV
PPSVMTSFRDFEVGEKKIFYSLAAIKGVGEAAVQHIVAKRMEKPFASLADFCERIDPKTV
GKRVFESLIMAGAFDCFGHDRAALMAGIERMMGLASLAHENATLGQSDIFGSAFSGQAPV
LHLPQADAWLPADRLHREFQVVGFYLSAHPLDEYKSALEKMRVQNWTDFAAAVKRGATAG
RLAGTVTTKQERKTKTGNKMGVVQFSDVSGQYESVLFSEALAQYRDLLEPGKSVVITVAA
EDRPEGVNLRIQTVQSLEDEASRVQKTLRIFVRDAAPLNMLSNQLTTRGEGEVSFIVLKG
EAQGEIEIELPNRYRITPSIASAMRAVPGVVEVELV
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtgaacggctcccgcgcgatcccctgaagcgtgaagcgttaaaagcggaagca
aagccagaggcttccgcaaggacgttcattcacctgcgcgttcattccgcctattctctg
cttgaaggcgcgttgccgctcggcaaggtcgtcggacatgccgtgaaggatgccgcgccg
gcaatcgcggtggccgacagcaacaacctgttcggcgcgctggaattcgcccagaaggcg
accaaggacggcgtgcagcctctggttggctgccaggtcgacgtcgacttcgccgagact
gccgattccggccagcgcggacccgtgttcaagcaggcgctcgatcttctcccgatcgta
ctgatcgccgccaccgaggcaggttatgccaacctcgtgcggcttgtcagccgactctat
ctcgaaacgcccaatggcgaaccggtgcatgccaagctcgactgggtcagcgggctggcg
gacggcatcatctgtctgaccggcgggccgcgggggccgatcggcacggcgatcaggagc
gatcaccaggtcctcgccgaagcccggcttctgggcttacaggcaatgttcggcgaccgg
ctttatgtcgagctggaacgcgtggccggctacgatcggggtgtagaggcagcgaccatc
gagctggcctaccgtcaccgcctgccgctggtggcgacaaacgaggccttcttcccgacc
cgcgccgactatgaggcgcacgacgcgctgatcgccatcgccgagggttcggtggttgcc
gaagacaacaggcgcaggctgacccctgacaatttcctcaagtcccagaaggagatgtcg
gagctttttgccgatctgcccgaagcgatcgacaatacggtcgagattgcccggcgctgc
tcgtattatcccaagaatcgcaatccgatcctgccgcgcttcaccgggggcgacattgcc
gacgccgacgccgccgttgcagccgaagcggccgaactgacccggcaggcccatgacggc
cttgccatgcggcttgaaacgcgcggcctggccgagggctatacgccggagcagtacaag
gaacgcctggaatacgagctcggcatcatcgagcgcatgaaattccccggctacttcctg
atcgttgcggacttcatcaagtgggcgaaggtgcagggcattccggtcggcccgggccgc
ggctcgggcgcgggttcgctcgtcgcctatgcgctcaccatcaccgacgtcgatccgctg
cgtttttcgctgctgttcgagcgcttcctcaaccccgaccgcgtctcgatgcccgacttc
gacatcgacttctgccaggaccggcgcgaagaggtcatccgctatgtccaggccaaatac
ggccgcgaccaggttggccagatcatcaccttcggaacgctgcaggcgcgcgccgtgctg
cgcgacgtcggacgggtgctgcagatgccctacggccaggtcgacaagctgtgcaagatg
gtgccgcagaacccggccaacccggtgacgctcggccaggccatcgagggcgagccgcgc
tttgccgaagaggccgagcgcgaaccgatcgtccagacgctgctcgacatggcgcagaag
ctggaagggctctaccgccacgcctcgacgcacgccgccggcatcgtcatcggcgaccgc
ccgctgtccgaactggtgccgatgtaccgcgacccgcgttcggacatgccggtcacccag
ttcaacatgaagtatgtcgagcaggccggcctggtgaagttcgacttcctcggcctgaag
acgctgacggtgttgcagaaggcgctgcagttcatcagccggcgcggcgtcgacatcgac
ctggcgctcatcccgctcgacgatccgctgacctatgccatgctgtcgcgcggcgagaca
gtcggcatcttccaggttgaaagtgcgggcatgcgcaaggcgctgatcggcatgaagccc
gaccgcgtcgaggacatcatcgcgctggtggcgctctatcgcccgggcccgatggagaac
atcccgacctacaacgcccgcaagcacggcgatgaggagattgcctcgatccatccgatg
atcgaccatctcgtgaaggagacccaaggggtcatcgtctaccaggaacaggtgatgcag
atcgcccaggagctgtcgggctattcgctcggtgaagccgatcttctccgccgcgccatg
ggcaagaagatccgcgccgagatggacaagcagcgcgagcgtttcgtcaccggttcgatg
gaaaagggcgtctccaagccccaatccaatgccatcttcgatctgcttgccaagtttgcc
gactacggcttcaacaagtcgcacgccgcagcctacgccattgtttcctaccagacggcg
tatctgaaggcgcactatccggtcgagttcctcgcggcctccatgacctacgatatgtcg
aacaccgacaagctcaacgacttccgccaggacgccatgcgcctcggcatcgatgtcgtg
ccgccgtccgtcatgaccagtttccgcgacttcgaggtcggcgaaaagaagatcttctac
tcgctcgccgccatcaagggcgtcggcgaagcggcggtccagcatatcgttgccaagcgg
atggaaaagcccttcgccagcctcgccgatttctgcgagcgcatcgatccgaagaccgtc
ggcaagcgtgttttcgaaagcctgatcatggccggtgcgttcgattgcttcggccacgat
cgcgcggccttgatggccggtatagaacgcatgatgggcctcgcctcgctggcgcacgaa
aacgccacgcttggccaatcggatattttcggcagcgccttttcgggtcaggcgcccgtg
ctgcacctgccgcaggccgatgcatggttgccggccgaccgtttgcaccgagagttccag
gtcgttggtttctatctctcggcgcatccgctcgacgaatacaaatcggcgctcgaaaag
atgcgcgtgcagaactggaccgatttcgccgcagcggtgaagcgtggcgccacagccggc
cggcttgccggcacggtaacgaccaagcaggagcgcaagaccaagaccggcaacaagatg
ggcgtcgtccagttctccgacgtctccggccaatacgaatccgtgctgttttcggaggcg
ctggcgcagtaccgcgacctgctcgaaccgggcaagtcggtggtcatcaccgttgccgcc
gaggatcggcccgagggcgtcaaccttcgcatccagactgtgcagtcgctggaagatgag
gccagccgcgtgcagaagacattgcgcatcttcgtgcgcgacgcagcaccgctgaatatg
ctctccaatcaactcacgacccgcggcgaaggcgaggtcagtttcatcgtgctgaaaggc
gaggcccagggcgagatcgagatcgaactgcccaaccgctaccgcatcacgccttcgatc
gcatcggccatgcgggcggtgcctggcgtggtcgaggtcgaactggtctag
DBGET
integrated database retrieval system
