Aminobacter sp. MSH1: CO731_03986
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Entry
CO731_03986 CDS
T05420
Symbol
rnd_2
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
amih
Aminobacter sp. MSH1
Brite
KEGG Orthology (KO) [BR:
amih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amih03016
]
CO731_03986 (rnd_2)
Enzymes [BR:
amih01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CO731_03986 (rnd_2)
Transfer RNA biogenesis [BR:
amih03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CO731_03986 (rnd_2)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AWC24498
UniProt:
A0A2S0XN75
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All DBs
Position
4032312..4033469
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AA seq
385 aa
AA seq
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MHVITTQDELDTAVAALEKSNFVTVDTEFIRETTFWPELCLIQMAAPGVSALVDPLAPGL
DLKPFFDLMANEAVTKVFHAARQDIEIVFHLGGLIPHPVFDTQVAAMVCGFGDSVSYEQI
VQKITGGRIDKSSRFTDWRHRPLSEKQLEYALADVTHLIDVYQHLVTELEREGRAHWLNE
EMEVLTSRATYDPHPEDAWKRLKMRLRKPQELAIVQAVAAWREREARERNVPRGRVLKDD
AIYEIAQQAPRDTTALSRLRTTPKGWERSSSATALLGVVNAALEIPRDQMPKLPKTFQPP
EGSSAAAELLKVLLRLVSEKEGVAPKVLASGDDIDRIAAEGEAADVPALQGWRRSVFGET
ALRLVRGEIAIRFDKRKIAVFEIEA
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtaataacgacccaggacgaactcgataccgccgttgccgctctcgaaaaatcc
aacttcgtcacggtcgacaccgagttcattcgcgaaaccactttctggcccgagctctgc
ctgatccagatggcggcgcctggcgtttcggcgctggtcgatccactggcgcccgggctc
gacctcaagccgttcttcgacctgatggccaacgaagcggtgaccaaggtcttccatgcc
gcgcggcaggacatcgaaatcgtcttccatcttggcgggctgatccctcatcctgttttc
gacacgcaggtggcggccatggtctgcggcttcggcgacagcgtctcctacgagcagatc
gtccagaagatcaccggcggccgcatcgacaagtcatcgcgcttcaccgactggcgccac
aggccgctgtcggaaaagcagctcgaatatgcgctggccgacgtcacccacctgatcgat
gtctaccagcatctcgtcaccgagctcgagcgcgaaggccgcgcgcactggctgaacgaa
gagatggaagtgctgacctcgcgggcaacctacgatccgcatccggaagacgcctggaag
cggctgaagatgcgcctgcgcaagccgcaggaactggccatcgtgcaggccgtcgccgcc
tggcgcgagcgcgaggcgcgcgaacgcaacgtgccgcgcgggcgcgtgctcaaggacgac
gcgatctacgagatcgcccagcaggcgccgcgcgacaccacggcgctgtcgcggctgcgg
accacgcccaagggctgggagcgctcctcttcggcaaccgccctgctcggcgtcgtcaat
gcggcgctcgaaataccgcgcgaccagatgcccaagctgcccaagaccttccagccacct
gagggctcgagcgcggccgccgaactgctcaaggtgctgctgcgcctggtctcggaaaaa
gaaggggtggcgcccaaggtgcttgcttcgggcgacgacatcgaccgtatcgccgccgaa
ggcgaagccgccgacgtccctgccctccagggctggcgccgctcggtgttcggcgaaacg
gcactaagactcgtgcgaggcgaaatcgccatccgtttcgacaagcgcaagatcgcagtg
ttcgagattgaagcctga
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