Acropora millepora: 114948642
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Entry
114948642 CDS
T06134
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
amil
Acropora millepora
Pathway
amil03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
amil00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
114948642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amil03021
]
114948642
03019 Messenger RNA biogenesis [BR:
amil03019
]
114948642
Transcription machinery [BR:
amil03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
114948642
RNA polymerase I system
114948642
Messenger RNA biogenesis [BR:
amil03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
114948642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
KOW1_SPT5
Spt5_N
GPKOW_C
DUF4744
Motif
Other DBs
NCBI-GeneID:
114948642
NCBI-ProteinID:
XP_029180998
LinkDB
All DBs
Position
4:22028105..22046967
Genome browser
AA seq
1011 aa
AA seq
DB search
MSDSEDSQFSDEEGEDITREEDDEDEEDEDEEDYDEDDDYEDERQRKKKRRHTGFILDEA
DVDDDIDEAEELPEDGFPDIIDSGERDEESNGEDLSGARRLQQMLGDKNAEELEAYYKKK
FAETSDRYKDDYELRPEIQQQSLLPGVKDPNLWTVKCKIGEEKSTVIGLMRKAISQQFTD
EPLQIKSAVAVEGLKGYIYIEAYKQTHVKQAIEGFGTLRLGKWQQMMVPIKEMTDVMKVV
KEVVSIKPKQWVRLKRGIYKDDLAQVDYVNTARNQVTLKMIPRIDYSRSRGLAKSAEDAG
EKRKKKRRPAPKLFDADAIRGIGGEIGQDGDFMIFEGSRYRGGFMYKTLAMSAIVVEGIK
PTLLELQKFETAPEDVELEVPLKSSKEGADEEQHTFVTGDVVEVFEGDLANLKGTILSIE
GNKITIMPKHEDLKDPLEFLASELQKHFKMGDHVKVIGGRYEGDTGLIVRVEDNMVVLFA
DLTMHELKVLPKDLQLCTERSSGVDSMGQHQWGDMVQLDPQTVGVIIRLDRDMFSVLNQH
GKVIQVKHQAVGRRRENKNAVALDSEQNSVQVRDIVKVIEGSHAGLQGEIKHLYRSFAFL
SSKMVIENGGMLVCKTKHLVLAGGGKAISNTLGISGFAPASPRITSPARDGGGGGGGGRG
GPRGGMGRGRGRGYGGRDMTLISQTVRISQGPYKGYVGIVKDATETTARVELHSSCKTIS
VDRTRLSIVGGPTSRGSSVYTKTPMYGSQTPMYGSRTPMYGSQTPTHGDGSRTPHYGSMT
PSHDPSRTPSHGGAWDPTQPNTPARNEDFDYNFDTSTPSPGVYGTPNPATPGGYGGPYTP
NTPGGGMYGSEPSYSPYTQTPSPATYGNPMTPGSVAPISPASPAFNPLTPGAGMEETHAD
WVTTDIEVRINENHEDPQLMDKRGVVRTVSGNTCTVYLYDEKRDVSVSINNVDPGEPVKL
DKVKVIMGDDRERVGTLINIDDPDGIIKMDQNDQLKILPLKFLAKLGPTDL
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaagactcacaattttctgacgaggaaggtgaggatatcaccagagaa
gaggatgatgaggatgaagaagatgaagatgaggaggattatgatgaagatgatgactat
gaagatgagaggcaaagaaagaaaaagcgaagacacactggatttatcttagacgaagca
gatgttgatgatgatattgatgaagctgaggaactacctgaggatgggtttcctgatatt
attgactccggtgaacgagatgaagaatcaaatggggaggacttgtcgggtgccagacgc
ttgcagcagatgcttggagacaaaaatgctgaagagttggaggcttactacaaaaaaaag
tttgctgagacttcagaccgatataaagatgactacgaactgcgtcctgagattcaacag
cagagtctgttgcctggagttaaagaccctaatttgtggacagtgaaatgcaagattgga
gaagaaaagtcaactgttattggtttgatgaggaaagcaatctcccagcagtttactgat
gagccattgcagatcaaatcagccgtcgctgtggaagggctcaaagggtatatctacatt
gaagcttacaagcagacgcatgtcaaacaggcgattgagggctttggcacccttcgactt
ggaaagtggcagcagatgatggtacctataaaagaaatgactgatgtaatgaaagttgtg
aaggaagtagtttctatcaaacccaaacaatgggtcaggttgaaacggggcatttacaaa
gatgatcttgcgcaggtggactatgtgaacacagccaggaatcaggttacactgaagatg
attcccagaattgattacagcagatcaagaggattagctaagtcagctgaggatgctggt
gaaaagagaaagaagaaaagaagaccagccccaaagctgtttgatgcagatgctataaga
ggaattggtggagagatagggcaggatggagattttatgatctttgaaggcagtcgctat
cgtggaggattcatgtacaagacactggctatgtcagctatagttgttgaaggtatcaag
ccaactttgctagaacttcagaaatttgagacagcgcctgaagatgttgaacttgaagta
ccacttaaaagttctaaagagggagctgatgaagagcaacacacatttgttactggggat
gttgtggaagtttttgagggtgatctggcaaatctgaaaggaacgattcttagcattgag
ggcaacaaaataaccatcatgcctaaacatgaagacttaaaggatcctttagaattcttg
gcaagtgagcttcagaaacatttcaagatgggagatcatgtcaaggtcatcggtggtcgt
tatgaaggagacacgggtctcattgttagagttgaagacaatatggtggtactgtttgct
gacctaacgatgcatgagctcaaagttctcccaaaggaccttcaattgtgtactgagagg
agcagtggagtggactccatgggtcagcatcagtggggagatatggtgcagctcgatcca
cagacagttggagttataattcgtttggacagagacatgttctcggtactaaatcaacat
ggaaaggtgattcaagttaagcatcaggctgtgggcagaagacgcgaaaacaaaaatgct
gtcgccttggattcggagcagaactcagttcaagtcagggacatagtgaaagttattgaa
ggatctcatgcgggcttgcaaggagagatcaagcatctgtatcgcagttttgcgttcttg
tcttcaaagatggtcatagagaatggtggcatgttggtttgcaaaacgaaacatcttgtc
ctcgcggggggtggcaaggccatttcaaatactttgggaatcagtggatttgctccagcc
tctccaagaataacaagtccagccagagatggaggtggtggtggcggaggcggccgtggt
ggcccacgaggaggaatgggccgtggccgaggtcgtggctacgggggtcgcgatatgaca
ctcatttcgcagacggtgcggatttcccagggtccttataaaggttatgttggaattgtt
aaagatgccactgaaaccacagcgcgtgttgaactgcacagcagttgcaagaccatctcc
gtcgacagaacgagactgagcatcgttggtggccccacaagccgtggcagctcagtttat
accaagacaccaatgtatggatcccagacccccatgtatggctcacggactcccatgtat
ggttctcagactccgactcatggcgacggaagccgcactcctcattatggctcaatgaca
ccatcccatgatccttcacgcactccatctcacggtggagcttgggatccaacacaacca
aatactcccgcgcgaaatgaagacttcgattacaattttgatacttccaccccctcccca
ggggtttacggaacaccaaaccctgccacacccggggggtatggaggaccatatactcct
aacacccctgggggaggaatgtatggctcggagcccagttattctccctacacgcagaca
ccatccccggccacttatggtaaccccatgacacccggaagtgtagccccgatatctcca
gcttctccggcatttaatcccctaacccctggagccggcatggaagagacgcacgctgat
tgggtgacgacggacatagaagtgcgaataaacgaaaaccatgaggaccctcagttgatg
gacaaaaggggtgttgtccgtaccgtctccggaaacacgtgcacggtttacttgtatgat
gaaaaacgtgacgtcagtgtttctatcaacaacgtggaccctggtgaaccggttaaactg
gataaggtcaaagtaatcatgggagatgatcgcgaacgcgtaggaaccctgattaacatt
gatgatccagatggaatcatcaagatggatcaaaacgatcaactcaagattcttccgctc
aagtttctcgccaagcttgggccaacagatctttga
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