Acropora millepora: 114954373
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Entry
114954373 CDS
T06134
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
amil
Acropora millepora
Pathway
amil04512
ECM-receptor interaction
amil04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amil00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114954373
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114954373
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amil04147
]
114954373
00536 Glycosaminoglycan binding proteins [BR:
amil00536
]
114954373
Exosome [BR:
amil04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114954373
Glycosaminoglycan binding proteins [BR:
amil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114954373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114954373
NCBI-ProteinID:
XP_044180799
LinkDB
All DBs
Position
8:11738430..11781588
Genome browser
AA seq
1749 aa
AA seq
DB search
MRLSLRLVAFFAICGWTLVYSPSTDAACQGCQSCVPKCIGPKGERGERGRAGQTGAPGLP
GFQGEEGLPGPRGMKGNKGEAGSFGPKGPRGRTGPPGMPGSNGGPGHPGDDGPRGMMGDP
GCNGTKGERGVAGNIGQSGGKGEKGLPGSVGEKGEKGDSAGDVVGAKGEPGPQGPKGDTG
MRGDAGSPGSQGPRGEKGANGTMGPRGFRGEKGVQGIKFTGPPGDTGDRGIKGEKGQPHQ
TDTVDKNTTIVIKGPRGENGEKGETGTAGDKGDKGEPGSPGPDGLQGVKGSTGERGEKGA
PGATGPPGDKGANGIKGELGDKGDPGPPGQAGDMGKTGEQGATGPPGDKGDPGPRGAGPP
GPDGAKGEAGPPGLPGPKGSNGSVGVQGPRGNDGPPGPKGSTGDPGPTGPPGGPGLSGEP
GMKGLIGKPGPPGPQGTAGEKGERGATITGPPGMPGKRGLRGEQGEKGDQGFPGRDGEST
SGPPGDKGDIGLDGPPGSDGFEGDKGEKGEKCDACPVPPRGPKGDNGSAGEPGDPGAPGP
RGAPGLQGGQGEKGAAGPNGRPGAVGQQGDPGETGQNGTKGEKGQVFRVVGEKGQKGEKG
EDGLQGDLGQPGSKGVGGTPGRQGPKGLKGEKGERGNDGTTGQTGPKGEKGLGGMKGEPG
EVKTGPKGINGSDGETGDKGEKGNEGPKGSKGDPYDPTQKGGGDLTVANCTKGDQGPPGP
PGPKGDPGLPGMKGERGSNGTDGPIGEPGKDGVGQKGSKGEVGEQGEKGSSGLKGDKGAP
GPSGPQGPPGPNGLKGDRGPKGNDGPPGMAGRPGMPGNNGQRGEKGDRGNRGNDGRPGER
GEKGDVGLKGVTGEAGTPGPRGTKGEPGMKGESVIGPPGEIGPIGPPGRPGKKGEPGQPG
QEGPKGQGGDQGPEGAQGDEGVKGDKGLAGEVGIKGEKGDPGNIGEKGIPGIPGLRGSRG
NKGSEGPSGDPGPRGDPGIKGEVGPEGRPGFPGLRGRQGPKGEVGAPGLSNATVMPGPAG
DKGERGPRGDPGRNGEGGIPGAKGEPGPTGPSGDKGEPGSPGIKGDPGPGGPVGSQGVPG
DQGLEGATGPKGEKGIAGPKGSKGSRGDDGDQGLRGEKGEPGLPGTGVKGERGPTGPEGS
TGPRGEQGNKGEKGTDGDPGPPGLIGPIGVTGEQGPKGDKGTRGETTQVIGPKGEPGSPG
INGTDGMNGQKGEQGPPGPIGRPGLKGDQGDAGEKGAEGQVGLPGQVGPNGTKGDPGPKG
DPGPTGPAGAKGNNGSAGFPGIPGQEGAPGPPGEDGGNGQPGVKGDAGPPGPMGDPGLMG
LDGVEGPIGAPGDQGEKGSKGDNGIVGPPGKDGAKGDPGLRGFQGDKGDPGAAGKDGQPG
DKGDTGLDGFIGLAGEQGEPGATGPPGQKGEPGVGVGQKGEKGNKGAEGIPGQQGDKGDR
GAQGLTGPIGPKGEDGDPGVNGEPGPKGDPGVDGLDGDLGPPGEKGFQGPPGSVGLPGPP
GEADFGFYVVRHSQTTNLPDCPAETVRLWDGYSLLYVQGNERAHGQDLGQPGSCLQKFST
MPFLFCNINQNCNLASRNDYSFWLSSPEPIPMMPVQENDIRPFISRCRVCEAPSMVMAVH
SQSSMTPDCPEKWQRLWKGYSFLMHTSAGNDGAGQLLSSPGSCLEDFRTSPFIECHGRGT
CHYYGSTYSFWLSTVTDEQQFRIPQAKTIKSGTQKEHVSRCAVCMKKPYNDGNGDVSGPD
PLGSRDLPN
NT seq
5250 nt
NT seq
+upstream
nt +downstream
nt
atgcggctttcgttgcgtttggtcgcgtttttcgcaatatgcggctggactttggtatat
tcccctagcacggacgcagcatgtcaaggatgccaatcatgtgttccaaaatgtatagga
cccaaaggggagaggggagagagaggaagagcaggtcaaactggtgcaccaggtttacca
ggctttcaaggtgaagaaggtcttcctgggcctagaggaatgaagggtaataaaggagag
gccggctcatttggaccaaaaggcccaaggggaagaacaggacctcctggaatgcctgga
tcaaatggcggtccgggacacccaggtgatgatggaccacgtggtatgatgggagatcct
ggttgcaatggaacaaagggtgaaagaggtgtggctggaaatataggacaatctggtggc
aaaggagaaaaaggattgcctggttctgtgggagagaagggtgaaaagggagattcagct
ggtgacgttgttggagccaagggtgaaccaggacctcaaggacctaagggagatacagga
atgcgcggtgacgcaggaagtccaggttcacagggaccacgtggagagaaaggagctaat
ggcacaatgggtccacgtggatttaggggagaaaagggagtacagggcattaagttcaca
ggaccaccaggagacacaggtgacagaggcattaaaggagaaaagggccagccacatcaa
accgacactgtcgataaaaatactactatcgtaatcaaaggtccaaggggtgagaatgga
gagaagggagaaacaggtacagctggcgataaaggcgataaaggagaaccaggcagccct
ggtccagacggtctccaaggagtaaaaggatcaactggtgaacgtggtgagaaaggtgcc
ccgggagctactggcccccctggtgacaaaggagccaatggcattaagggtgaactaggt
gataagggagatccaggaccacctggtcaagctggagacatgggaaagacaggtgaacaa
ggtgccacaggaccacctggtgacaaaggtgaccctggtcctagaggagctggtccccct
ggtcctgatggagcgaagggtgaagcaggtcccccagggttacctggtcccaagggatcc
aatggaagtgtcggagttcaaggtccaagaggaaatgatggtcccccaggaccaaaagga
tccacaggggatccaggacccacaggacccccaggtggacctggattatcaggtgaacct
ggaatgaaaggactgataggaaaacctggacccccagggcctcaaggcacagctggtgaa
aagggggaacgaggtgcaactataactggccccccaggtatgcctggcaaacgaggtcta
cgaggtgaacaaggtgaaaaaggcgatcagggattcccaggaagagatggtgagtctaca
agtggacctcctggtgataaaggagatattggcctggatggtccacctggttctgatggc
tttgaaggagataagggagagaagggagaaaagtgtgatgcttgcccagtgccgcctaga
ggacctaaaggagataatggcagtgctggggaaccaggggatccaggagcccccggaccc
cggggagctcctggactacaagggggccaaggagaaaagggtgctgcagggccaaatggt
cgacctggagctgtgggacaacaaggtgaccctggtgaaacgggccaaaatggcaccaaa
ggtgaaaaggggcaggtcttcagggtagtaggtgaaaagggacaaaaaggagagaaaggc
gaggacggactgcaaggggaccttggacaaccgggaagtaagggtgttgggggaacccca
gggcgacagggacccaaaggacttaaaggagaaaagggtgaaagaggaaacgatggcaca
actggccaaactggaccaaaaggagagaaaggattgggtggtatgaagggagaacctgga
gaagtaaaaacaggaccaaagggaatcaacggatccgatggagagactggtgacaaagga
gagaaaggaaatgaaggaccgaaggggagtaaaggtgacccatatgatcctactcaaaaa
ggaggaggcgatctaactgtggcaaattgtaccaagggagatcaaggacctcctggcccc
cctggtccaaaaggagatccgggacttccaggcatgaagggagagaggggttccaatgga
actgatggtcctattggagaaccaggaaaagatggtgtgggtcagaaaggatctaaagga
gaagtaggagagcaaggagaaaaaggaagctctggactcaaaggtgacaaaggggcacct
ggtccgagtggcccacaaggccctccaggtcccaatggcttgaaaggagatcgaggtccc
aaaggaaatgatggacccccaggtatggctgggcggccggggatgccggggaataatgga
cagcgaggagaaaagggagatagaggaaatagaggaaatgatggcagaccaggagaaagg
ggtgaaaaaggagatgttggcctaaaaggagttacaggtgaggcaggtacgcccggccct
cgaggaacaaaaggggaacccggaatgaaaggagaatcagtcattgggcctcctggcgaa
attggacccataggacctcctgggcgccctggaaagaaaggagaaccaggccaacccgga
caagaagggcctaagggacaaggcggtgatcagggacctgaaggggctcagggagatgaa
ggtgtgaaaggagacaaaggcctcgctggtgaagtaggaatcaaaggcgagaagggagat
ccgggaaatatcggggagaaaggaatccctggtattccaggattgcgaggttctaggggg
aacaaaggaagtgaaggaccatccggtgatccgggtcccagaggtgatccaggaatcaaa
ggcgaagttggccccgaaggaagacctggtttccctggattgcgaggaagacaaggtccg
aaaggtgaagttggtgcccctgggttatccaatgccacagtaatgccaggaccagcaggg
gacaaaggagaacgcggcccccgtggtgatcctgggcggaatggcgaaggtggcattcct
ggtgcaaaaggggagccaggtcccactggtccctctggagataagggtgaacccggcagc
cccggaattaaaggtgaccccggacccggtggtcctgtaggatctcagggagtcccagga
gatcagggacttgaaggagcaacgggaccgaaaggtgaaaagggtatcgcgggaccaaaa
ggaagcaaagggagtcggggcgatgatggagatcaaggtttaagaggtgaaaagggtgaa
ccagggctgcctggaaccggagtgaagggggaaagaggtcctactggcccggaagggagc
acaggaccacgcggagaacaagggaataagggagagaagggcaccgatggtgatcccggc
ccacctggactcataggacctattggtgtaacaggtgaacaggggcctaaaggagacaaa
ggaactcggggagaaacaacacaagtgattggtcccaagggagagcctggttcccctggt
attaatggaacagacgggatgaatggacaaaagggagagcaaggaccacccggtcccata
ggccgacccgggctcaagggagatcaaggtgacgctggtgagaaaggtgcagaaggccag
gttgggcttcctggtcaggtgggacccaatggcaccaaaggtgatcctggtccgaaggga
gatcccggaccaaccggacctgctggtgcaaaagggaacaacggtagtgcagggttccca
ggtattccagggcaagaaggggcaccaggtcctcctggggaagatggaggaaatggccaa
cctggtgtaaaaggcgacgcgggcccgccaggaccaatgggagatcctggattgatggga
ttagacggtgttgaagggccaattggagcccccggtgatcagggagaaaaaggatcaaag
ggcgataatggtatcgttggtccacccgggaaagacggtgccaagggagacccgggtctc
aggggtttccaaggagacaaaggggatccgggagccgctgggaaagatggacagcctggt
gataaaggagatacaggactggacgggtttataggtcttgcgggagagcaaggagaacct
ggagctactgggccaccaggccagaagggtgagcctggagtaggagtgggtcagaaagga
gaaaagggaaataaaggtgctgaaggtattcctggtcaacaaggtgataaaggtgacagg
ggagctcagggactgaccggaccaattggaccaaaaggggaagacggagatcccggagtt
aatggagaacctggacccaaaggcgatcctggagtggatggtctagatggcgatctagga
cccccaggcgaaaaaggatttcagggacctccaggaagtgtgggacttccggggccccct
ggtgaagcagattttggattctacgtagtaagacatagtcagacgacaaaccttccggac
tgccccgcggaaactgtgaggttatgggatggctatagtttgttgtacgtgcaagggaat
gagcgcgcccacgggcaagatttgggacaacctggctcttgtttacagaaattcagcact
atgccatttttgttttgtaacatcaaccagaactgcaacttggcttctagaaatgactac
agtttttggctgtcctcgcctgagccaattccaatgatgccggtgcaagagaatgacatc
cgacctttcattagccgctgtcgtgtttgcgaagctccctccatggtaatggctgttcac
agtcagagctcaatgacaccggactgcccagagaaatggcagaggctttggaaaggctat
agcttccttatgcacacaagcgcgggcaacgacggcgcgggccagttgttatcatcccca
ggctcctgccttgaagacttccgcacgtcgccatttattgaatgtcacgggcgtggcacg
tgtcattattacggcagcacctacagcttctggctgagtacggtcacagacgagcaacag
tttagaataccgcaggcaaagactataaaatctggaacccaaaaggagcatgttagtcgg
tgtgcagtttgtatgaagaagccttacaacgatgggaacggagacgtgagtggaccggat
ccattaggttcaagggacttgcctaattaa
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integrated database retrieval system