Acropora millepora: 114955149
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Entry
114955149 CDS
T06134
Name
(RefSeq) collagen alpha-2(V) chain-like isoform X2
KO
K19719
collagen type II alpha
Organism
amil
Acropora millepora
Pathway
amil04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
amil00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114955149
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amil00536
]
114955149
Glycosaminoglycan binding proteins [BR:
amil00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114955149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
114955149
NCBI-ProteinID:
XP_029187766
LinkDB
All DBs
Position
7:127309..156118
Genome browser
AA seq
1209 aa
AA seq
DB search
MVCQESKVIWVNRETLENLEIPAWLDQLGSQGQRGREGLDGNPGDRGLQGLIGRPGSPGE
VGRDGSTGKEGPEGPAGFPGETGEPGPPGVPGPKGDQGPLGIIGPRGQNGEIGQTGPVGP
KGGKGRAGVPGEPGSPGLKGVTGSVGNAGLQGERGANGAPGTDGRPGEKGRAGERGKPGP
PGPRGSLGAKGNQGRNGQLGLPGSRGPRGKKGSRGRRGRRGLPGDIGPKGPEGQPGFPGA
PGLQGSKGHDGLHGLDGIPGEKGDQGAPGNVGETGKQGMQGARGQPGKPGAAGSKGPEGF
PGEDGRPGRAGDPGTVGIPGSPGFQGATGMKGVDGKTGATGASGPRGDKGDKGLKGPTGL
AGRTGRSGYPGELGPMGSPGEQGQMGPPGAQGPPGYAGRNGRRGQRGELGKDGKPGLVGE
RGPPGSSGLPGPPGRPGRVGPRGTDGDDGEVGRPGARGPAGRHGRRGSRGFRGLRGKKGP
SGRKGEKGGVGFPGLPGRNGKDGLPGEDGRPGTRGQPGLRGPKGKDGNDGLPGRPGKQGE
AGVQGPPGSPGVPGLTGPTGPIGPRGSLGEKGGSGAKGSKGKRGELGEKGLAGGLGLAGS
SGEIGDIGKLGVPGPRGPPGQPGSIGAPGRPGPDGEPGLEGRPGMPASKGARGPNGKPGK
PGPPGLPGISGLNGERGRQGKDGALGLPGPAGLQGPKGERGKVGMRGLNGPVGVSGSDGE
LGDQGPDGEPGVPGDAGYLGFPGEPGREGSQGPKGRSGTPGSDGEPGRNGEPGGPGDDGN
RGQPGKTGAIGVRGIDGEPGEKGEIGFAGNTGDDGQQGSVGERGQSGSDGIKGTQGDAGE
MGPIGPTGDTGYAGTKGPPGLPGEYGNKGDPGQQGNTGPFGRKGVEGAQGPPGPQGYSGS
EGRKGIPGDPGLPGQRGMRGLDGPAGPPGPPGPPGEQGVPGRNMLMNTGTILGSPNKGPG
FRLYSAKEGFSKTQRRRGSQTDSNSQEELSDTLIKYLTSLSNIIYFYKTQHGTRDFPARS
CRELYLEHPESPSGKYWIDPNEGCASDAEFVYCDFERGSTCISAEKKQITIPNARPSQWM
SESIENSQLINYGISPMQMRFLRLLSKRASQNITYHCFNSRAWENEDSGRTIKVKGDNEL
ELLKSQGTKTMVLRNDCENLDNKWHQTVLEFNSNRTEALPVIDISPYDISTSDMKQEFFV
EIGPVCFFY
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atggtttgccaggaatcaaaggtgatatgggtgaacagggaaacattggagaacctggag
atcccggcttggctggaccaactgggcagccaaggccaacgaggtagagaaggcctggat
ggtaacccgggggacagaggactccaaggccttataggacggcccggatcaccaggtgaa
gttggtagggatggatccacaggaaaagaaggccccgagggaccagcgggtttccctggg
gagacaggagagccgggcccccctggagttcctggaccaaaaggcgaccaagggccatta
ggcattattggaccaagggggcaaaacggcgaaattggacaaaccggaccagttggtcct
aagggaggaaaaggaagagcgggtgtcccgggtgaaccgggaagtcccggattgaaagga
gtaacgggttcagttggaaatgctggacttcaaggtgaacgaggcgcaaacggtgccccg
ggaactgatggcagaccaggcgaaaaaggaagagctggagagaggggaaagcctgggccc
cctgggccacgtggaagtcttggagctaaagggaatcagggccgtaatgggcagttgggg
ctccctgggtcccgcggtcctcgcggaaaaaagggatccagagggcgccgtggtcgtcga
ggtttacccggtgacattggaccaaagggacctgaaggacagcccggttttcctggagcg
cctggtttacaagggtcaaagggacatgatggattacacgggttggatggaattcctgga
gaaaagggagatcagggtgctcctggcaatgtcggggaaactggaaagcaaggaatgcag
ggagcccgtggacaaccaggaaaacctggggcagctggaagtaaaggaccagagggtttt
ccaggtgaggatggtagacctggcagagcaggcgatccgggtacagtaggaattcctgga
tctcctggatttcaaggtgcgacaggaatgaagggagttgatgggaaaacgggtgcgact
ggtgctagtggaccaagaggcgacaagggtgacaaaggactgaaaggcccaactggtctt
gctgggagaacaggacgaagtggttatcctggagaactaggtcctatgggttccccaggg
gagcaaggacaaatgggtccacctggagcgcaaggaccacctggttatgctggacgaaat
ggccgacgcggacaaagaggggaacttggaaaagacggaaaacccggtctcgtgggtgag
cgcggaccacctggatcaagcgggcttcctggacctccgggtcgacctggccgcgtaggt
ccaagagggacggacggagacgacggagaagtgggtcgccctggagcgcgtggaccagcc
ggacgccatgggagacgtggttcaagggggtttagagggttgcgaggaaagaaaggacca
tctggaaggaaaggagagaagggtggcgtaggatttcctggattgcctggcaggaatggt
aaagatggattaccgggtgaagatggacgaccaggcactagaggacaaccgggattaagg
ggaccaaagggtaaagatggcaatgatggacttccggggcgcccaggaaagcaaggagaa
gcgggagtacaaggacctccaggaagcccaggagtcccaggattgactgggccaactggt
cctataggaccacgtggttcactcggagagaaaggcggttctggagccaagggttccaaa
ggcaaaagaggtgaacttggagaaaaaggcctagcaggaggattgggattagctggttcc
tctggagaaatcggtgatattggaaaattaggagttccgggtcctagaggtcccccagga
caaccagggagcattggtgctccaggaaggccgggtcctgacggtgaacccggattagaa
ggaaggccagggatgccagcatccaagggtgctcgaggaccaaacggaaaaccgggaaag
cctggacctcctggtttacctggtataagcggcctaaacggtgaacgtggcagacaagga
aaggatggagcgctgggccttcccggaccagcaggccttcaaggaccaaagggagaaaga
gggaaagtgggaatgcgtggtctcaatggaccagttggagtttcaggatcagatggtgaa
ttgggagaccaaggccctgatggtgaacctggagttcctggtgatgccggatacctggga
ttcccaggagagcctggacgagaagggagccaaggtccgaagggacgatctggtactcca
gggagtgacggagagcctggaagaaatggagagcccggaggaccgggagacgacggaaat
cgcgggcaaccaggtaaaaccggtgctattggagtccgtggaatcgatggtgaaccaggc
gaaaaaggagaaattggctttgctggcaacacgggcgatgatggccaacaaggaagcgtt
ggagagagaggacaaagtggatcagatggaataaaaggaacgcaaggagacgcaggggaa
atgggacccattgggccaacgggggacaccggttatgcaggaacgaaaggacccccaggt
ttacccggagagtatggtaacaaaggagatccaggacaacaaggaaacacgggtcccttt
ggacgaaaaggtgttgagggcgctcaagggcctccagggccacaaggatatagtggatcc
gagggaagaaaaggaataccaggggatcctggacttccaggacaacgcggaatgcggggt
ttggacgggccagcaggacccccaggacccccagggccacccggagagcagggtgtacct
ggtcgaaatatgctgatgaataccggcacgatactcggtagcccaaacaaaggtccagga
tttcgactctactccgcgaaagagggattttcaaaaacccaaagacgacgcgggtctcaa
accgatagtaattcacaggaagaacttagcgacacactgataaaatatttgacgagtctt
agtaatattatttatttctacaaaacacaacatggcactagagattttccagctcggtct
tgcagggaactttatcttgaacaccctgagtccccgagtgggaagtactggatcgatcca
aacgaaggttgtgcgagcgacgcagagttcgtttactgtgactttgaaagaggatctact
tgtatatcagcagagaagaaacagattaccatcccgaatgcgcggccatcacaatggatg
agtgaaagtattgaaaattcgcaactcataaactacggcattagtcccatgcaaatgcga
ttcttgcgcttattaagcaaacgggcttcacagaatatcacgtaccactgcttcaactct
cgagcctgggaaaacgaggacagcggtcgtaccataaaagtaaaaggtgacaacgaacta
gaactgctgaagtcgcaaggcacaaagactatggtattgagaaacgattgcgagaattta
gataacaaatggcaccagactgtgttggaattcaactcaaacaggacggaagccctacca
gttattgacatatccccttacgacatctccacatccgacatgaagcaagaattttttgtg
gaaataggacccgtttgtttcttctactga
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