Acropora millepora: 114961117
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Entry
114961117 CDS
T06134
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
amil
Acropora millepora
Pathway
amil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114961117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amil03019
]
114961117
03041 Spliceosome [BR:
amil03041
]
114961117
Messenger RNA biogenesis [BR:
amil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
114961117
Spliceosome [BR:
amil03041
]
Complex B
Other components
Prp19-related factors
114961117
Complex C
114961117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_12
TPR_8
RPN7
ARM_TT21_C
ARM_TT21
TPR_7
PPR
NRDE-2
DHR-2_Lobe_A
SNAP
Motif
Other DBs
NCBI-GeneID:
114961117
NCBI-ProteinID:
XP_044178847
LinkDB
All DBs
Position
1:12546299..12559569
Genome browser
AA seq
844 aa
AA seq
DB search
MPVSTRNLIIEEEDLPYEEEIIRSPYSVKFWMRYVEHKAKKGSNKALNLLYERALKELPG
SYKIWYLYLKERRRQVRGRPITDPAYEDVNNAFERSLVFMHKMPRIWIDYCQFLVDQCKV
TRSRRTFDRALRALPITQHTRIWPLYLKFVRKHHIPETAVRVYRRYLKLEQENTEEYIDY
LKSVGWLDEAAARLAFIVNKEKFVSKEGKSNHQLWQELCELISKNPDKIKSLKVTDIIRG
GLRRFSDSLGQLWNSLADFFIRSGHFEKARDVYEEAIQTVMTVRDFGQVFDAYAQFEESM
ISAKMETTAEMGATEEDDIDLELRMARFENLMDRRPLLLSSVLLRQNPHNVHEWHKRVKL
YEGKPNEIINTYTEAVQTVNPKLASGKPHTLWVEFAKFYEQYGQLKEARLIFDKATKVNY
RKVDDLAAVWCEFGEMEIRHENYKQALDLMRRATAMPSAKADYYDETETVQRRVYKSLKL
WSMYADLEESLGTFQSTKAVYNRILDLRIATPQIVINFCTFLEEHHYFEESFKIYERGVA
MFKWPNVFDIWNTYLTKFIHRYGGKKLERARDLFEQVLEGCPAKFAKSFYLMYAKLEEEH
GLARHAMTIYERATKAVLPEEQFEMFNLYIKQAAEIFGVTHTREIYEKAIEVLMDDQARE
MCVRFADLERKLGEIDRARAIYMHASQMADPRTTPTFWKVWHDFEVRHGNEDTFREMLRI
KRSVQAQFNTQVNFMSAQMLAAAASKAAGASTDEPIVDDMQRLEQQAQAVAAKDVTAKLK
EKVLFVRGETNDADNQDTTAVANPEEIDIDDEDDDDDDGNEQDVQVEQQFVPSKVFGGLK
QDED
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgagcactaggaatctaattattgaagaagaagatcttccatatgaagaagaa
ataatccgcagtccttactctgtaaaattttggatgagatacgtagagcacaaagctaaa
aaaggctccaacaaggcactgaatctactttatgaacgtgctctgaaggaactaccagga
agctataagatttggtatctttatcttaaagagaggaggagacaagtccgtggaagacct
ataacagatccagcatatgaagatgtcaataatgcatttgaaagatcattggtcttcatg
cataagatgcctcgaatttggatagattactgtcagttcttagttgaccagtgtaaagta
acaagatcacggcggacatttgacagagctctgcgggctcttcccatcactcaacacact
cgaatttggcctctttatctgaagtttgtccgcaaacaccacattcctgagacagcagtc
agagtatacagaagatatttaaagcttgagcaagaaaacaccgaagaatacattgattat
ctgaagtccgttggatggctagatgaagcagctgcacgtcttgctttcattgtcaataag
gagaaatttgtgtcaaaggaagggaaatcaaatcatcagctttggcaagagctttgtgaa
cttatttccaagaatccagacaagatcaagagtctcaaagtaactgatattattcgagga
ggattgcgcagattttctgacagtttaggtcaactgtggaactcacttgctgatttcttc
attagaagtggacactttgaaaaggcaagggatgtttacgaagaagccattcaaacagtg
atgactgtcagagactttggacaggtttttgatgcttatgctcagtttgaggaaagtatg
atcagtgctaaaatggagacaacagcagaaatgggggccactgaagaagatgacattgat
ttggaactcaggatggcacgatttgagaatttaatggacagaaggcctttgctcctcagc
agtgttctcttgcgtcaaaaccctcacaatgtccatgaatggcataaaagagtcaagctt
tatgagggaaaacccaatgaaatcatcaacacatatacagaagctgtacagacagttaac
cccaagctggcatcgggcaaacctcacacgttgtgggttgagtttgccaagttttatgaa
cagtatggccagctgaaagaggcccggttgatatttgacaaggctacaaaagtgaattat
cgcaaagtggatgacttggctgctgtgtggtgtgagtttggtgaaatggaaatcagacac
gaaaattacaagcaggcacttgaccttatgagaagagcaacagctatgccatctgccaaa
gcagattactatgatgagactgaaacagtacagagacgagtctacaaatctttaaagctg
tggtccatgtatgctgatctcgaggagagtttggggacctttcagtccacgaaggcagtg
tacaaccgcattttggatctacggatagcaactccacagattgtaattaacttctgtacg
tttcttgaggaacatcactattttgaggaatctttcaagatctatgagcgtggtgtggcg
atgttcaaatggccaaatgtgtttgatatatggaacacgtacttgacaaaattcatccat
agatacggtgggaaaaaactggagcgtgcaagagacctttttgagcaggtccttgagggc
tgtccggctaaatttgcaaaaagtttttatttgatgtacgccaagcttgaggaggaacat
ggtcttgctcgccatgctatgacaatatacgagagagcaacaaaagctgttttaccggag
gaacagtttgaaatgttcaacctgtatattaagcaagcagcggaaatttttggcgtgaca
cacactcgcgaaatctacgagaaagccattgaagtgctaatggatgaccaggccagagag
atgtgcgtaaggtttgctgatctcgagcgtaaactcggagagatcgaccgggccagagca
atttacatgcatgcttcacagatggcggacccgcggaccaccccgactttctggaaagtg
tggcatgacttcgaggttcggcatggaaacgaggatacgttccgcgaaatgttacgaatc
aaaaggagcgtgcaggcgcaattcaacacacaggttaacttcatgtctgcgcaaatgttg
gcagcagccgcaagcaaagccgccggagcaagtacagatgaaccaattgttgatgacatg
cagcggttagaacagcaggctcaagccgtggcagctaaggatgtgactgccaagttgaaa
gaaaaagtcttgttcgtcaggggggagactaacgacgctgacaatcaggacaccacagca
gtagcgaacccggaagaaatcgacattgacgacgaggacgatgacgatgatgatggaaat
gaacaagacgttcaagttgaacagcagtttgtcccgagcaaggtttttggagggttaaaa
caagatgaagattga
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