Acropora millepora: 114961302
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Entry
114961302 CDS
T06134
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
amil
Acropora millepora
Pathway
amil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114961302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amil03019
]
114961302
03041 Spliceosome [BR:
amil03041
]
114961302
03009 Ribosome biogenesis [BR:
amil03009
]
114961302
03016 Transfer RNA biogenesis [BR:
amil03016
]
114961302
Enzymes [BR:
amil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114961302
Messenger RNA biogenesis [BR:
amil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114961302
Spliceosome [BR:
amil03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
114961302
Complex C
U4/U6.U5 tri-SnRNP related factors
114961302
Ribosome biogenesis [BR:
amil03009
]
Eukaryotic type
Pre-60S particles
Helicases
114961302
Transfer RNA biogenesis [BR:
amil03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114961302
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
114961302
NCBI-ProteinID:
XP_044164572
LinkDB
All DBs
Position
14:4370215..4389206
Genome browser
AA seq
1027 aa
AA seq
DB search
MADSFGEDLFAVFEENPAPVINRKTENEKKVGDSSSATEDSEGTSKFGEKRQFKPDVIDL
ALDENEAKKAKFDDLDSFLETIPRVNVMSVETTEACTHEVAVPEGCEHVPLTKKPAKPAK
EYPFILDPFQKESLKCLENNQSVLVSAHTSAGKTVVAEYAIAMSLQNKQRVIYTTPIKAL
SNQKYRELYEEFQDVGLMTGDVTINPSASALVMTTEILRNMLYRGSEVMREVAWVVFDEI
HYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWIAHLHKQACHVVYTDFRPT
PLQHYIYPAGGDGLFLVEDEKGEFREENFQKAMAVLREGGAESWNKRGRKGGTKGPSSCY
KIVKMIMERNFQPVIIFSFSKKECEAYALQMSKLDFNSAEEKKLVEEVFNNAIDCLSDED
KALPQVEHVLPLLVRGIGIHHSGLLPILKETIEILFSEGLIKALFATETFALGLNMPART
VVFTNARKFDGKDFRFITSGEYIQMSGRAGRRGIDDRGIIILIIDEKMGPDVGKGLLKGQ
PDPLNSAFHLTYNMVLNLLRVEEVNPEIMLEKSFCQFQNYASVPGMIDKLKTLEAERDSF
QIPNEESITAYYRIRQQLKKLANDMLTFIHKPKNSLPYLQPGRLIQVKNNDCDFGWGVVL
NFQKKANQKSGPVKSEPLYVIEALLNCSSKSVKSADGETPMPCGPDEKGEMQVVPILLHL
VQAISAVRLYIPKDLRSLDSRQGVGKSLQEVKRQFPDGLPLLDPIEDMGIKDNGLRTVVR
KTEMLEHRMFTHPLHKDSSLESLYGQYEQKAKVIAQIKLVKKELKKTKTILQLDELKCRK
RVLRRLGYATAADVIELKGRVACELSSGDELLLTEMIFNGVFNELTVQQCVALLSCFVFE
EKCDELPKLTEELAGPLRQMQESARRIGKVSEEAKLNINVETYVEKFKPNIMDVVFAWAN
GASFAQICKMTDAFEGSIIRAMRRLEELLRQMCQAAKAIGNTELENKFAEGIIKIKRDII
FAASLYL
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggccgacagtttcggcgaagacctctttgctgttttcgaggaaaatccggccccagtt
atcaacagaaagacggaaaatgagaaaaaagtcggtgatagttcatctgcaactgaagac
tcggaaggtacctcgaaatttggcgaaaaaaggcaatttaaacccgatgttatcgacctt
gcgttggatgaaaatgaagcaaagaaggcaaaatttgacgatttggacagctttttagaa
acaatacctcgtgtaaatgtgatgagtgttgagacgacagaagcatgtactcatgaggtt
gctgtccctgagggatgtgaacatgtccctttgacgaaaaaaccagctaagccagcaaag
gaatatccattcattttggatcctttccagaaagaatcgctgaaatgcttggaaaacaac
caatctgttttggtgtctgcacatacatctgcaggaaaaacagttgttgctgagtatgcc
attgctatgtctctgcagaacaaacaaagggttatctatacaacacctataaaggctcta
agtaaccaaaaatacagagaattgtacgaagaattccaggatgttggcctgatgacagga
gatgtgactatcaaccccagtgctagtgcacttgtcatgacaacagagattttacgtaac
atgctttacagagggtctgaggtaatgagggaagtagcttgggttgtgtttgatgagatt
cactacatgagagataaagagcgtggtgttgtgtgggaagaaaccatcatacttttacct
gacaatgttcattacgtctttttatctgccacaattccaaatgccagacagtttgcagaa
tggattgctcatcttcataaacaggcttgtcatgttgtgtatacagatttccgacccacc
cctcttcagcattatatttatcctgctggtggtgatggattgttccttgtggaagatgag
aagggggagtttagggaagagaatttccaaaaagccatggctgtgttaagagagggggga
gcagagtcttggaataaaagagggcgcaaaggtggaactaaaggtccttcaagctgttat
aaaattgtgaaaatgatcatggaaaggaattttcaacctgtcatcattttcagcttcagc
aagaaagaatgtgaagcatatgctctgcagatgtccaaacttgatttcaattcagctgag
gagaaaaagcttgtggaagaagtcttcaacaatgccattgattgtttatccgacgaggac
aaagcgctccctcaggtagaacatgtccttccccttttggttcgtggcattggtatccat
cactcagggcttctgccaattctaaaggagacaattgaaatccttttctcagagggatta
atcaaggctctctttgcaacggaaacttttgctcttggtctcaacatgccagcaaggaca
gttgtgtttacaaatgctaggaaatttgatggcaaagatttccgatttatcacttcagga
gagtacattcaaatgagtggcagagctggaaggcgtggtattgatgacagagggatcatt
atcttgatcatagatgagaaaatgggtcctgatgttggaaaaggactgcttaagggtcaa
cctgatccgcttaacagtgctttccatctcacatacaacatggtgttaaatttgctgcgt
gtggaagaagtgaatccagagatcatgttggagaagtccttttgccagtttcagaactat
gcttcagtgccaggaatgatagacaaactgaaaactttggaagcggaaagagactcattt
caaatcccaaatgaagaatctatcacagcttattataggatcagacaacagctgaaaaaa
ctggccaatgacatgcttacctttattcataaacccaagaactctctgccttatctccag
cctggaagacttattcaggtcaaaaataatgactgtgattttggttggggtgttgtgctt
aacttccaaaagaaggcaaatcagaagagtggtccagtcaaatcagagccgttgtatgta
atagaggcactgttaaactgctctagcaaatcagttaagtccgctgatggggaaacacca
atgccatgtggaccggatgaaaagggcgaaatgcaggttgtacccatcttgttgcatctg
gtccaagccataagcgctgttagactgtatattcctaaagacttaagatcactggacagc
agacagggtgttggaaaatcactacaggaagtgaagcgtcaattcccagatggtcttccc
ttgctggatccaattgaagacatgggaatcaaagataatggattgagaacagttgttagg
aaaacagagatgttggagcatcgcatgtttactcatccgcttcacaaggactcttcgttg
gagtcactgtatggtcaatatgaacaaaaagcaaaggtaattgcacaaataaagttagtg
aaaaaagaattgaagaagacaaagacaattcttcaacttgatgaactgaagtgcagaaaa
cgagtccttagaagactaggatatgcaacggctgctgatgtgatcgaattgaaaggacgt
gtagcatgtgagctgagcagtggtgacgagctgcttctaacagagatgatattcaatggt
gtcttcaatgagctcacagtacagcaatgtgtggctttactgagttgttttgtattcgaa
gaaaagtgtgatgagttgcccaaactgacagaagagttagcaggaccattaagacaaatg
caggagtcagcacgtcggattggaaaagtatcagaagaagctaaactcaacattaatgtg
gaaacttatgtggagaaattcaagcccaatattatggatgttgtgtttgcttgggcaaac
ggcgcctcgtttgcacagatctgcaaaatgactgatgcttttgaagggagcattataaga
gctatgcgacgtctagaggaacttttgaggcaaatgtgccaagctgccaaggctattggt
aacaccgaactggagaataaatttgcagaaggaattatcaagatcaaaagagacatcatt
tttgcagccagtttgtacctttaa
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