Acropora millepora: 114968321
Help
Entry
114968321 CDS
T06134
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
amil
Acropora millepora
Brite
KEGG Orthology (KO) [BR:
amil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amil03041
]
114968321
Enzymes [BR:
amil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114968321
Spliceosome [BR:
amil03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114968321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
HA2_C
R3H
DEAD
OB_NTP_bind
Ank_2
Ank
HA2_N
Ank_5
ATPase
nSTAND3
AAA_22
AAA_19
Ank_4
T2SSE
Cas3-like_C_2
Dehydrin
Sigma54_activat
TsaE
AAA_16
Ank_3
AAA_7
AAA_23
Motif
Other DBs
NCBI-GeneID:
114968321
NCBI-ProteinID:
XP_029204296
LinkDB
All DBs
Position
1:complement(34680556..34721019)
Genome browser
AA seq
1638 aa
AA seq
DB search
MNMASSGSPKKTRRQSEICVKEEFKIAVKIALDRFRFQEKQKVLEFPSSFTSLERAYIHR
MCQNIGLASQSQGKGRNRYLTVSKKDVNTGNYSSILKLSSNACQHIEHLAKKFPLNIKER
QELQPKTERSTATFDSGRSSRENKVVGKLNNNMPAIPPVAKPNEFSSIRKSLPIYELREQ
ILKLISENQVILISGETGSGKTTQVPQFILEDANTQGTQCRIVCTQPRRISALSVSERVA
TERGERLGQTVGYQIRLDNRISPKTLLTYCTTGVLLQTLMSGDNSLSFVTHVIVDEIHER
DRFTDFLLIAVRDLLAVNRRLKLILMSAALDIQLFIDYFGKCPVVNVPGRCFEVKEYFLE
DVLKMTSYCSDEMARHLKDTSKAQIKTETECADSVMNRKSTSVKENLDEAKIAEKNNEAE
KIEKTVELCSLDKVDLEPEELFDEELQPRGDIDLEEDSDSKIAGNAQGKDYLEAADFPLD
EELTDGEVMEQDILLEDDDDNEGANEDVDDDEEDEEVVVEEENNDDDEIKEVEEGVEVLK
LEDEVENGSAQTEEVNSEDKQDDEESYNEEQYLREEMDNSISEAWLNGSEDAFVQILYLV
MQENISVDYQHSETQATPLMVASGRGCASVVEQLLNLGANPHIKEPKNGWTAIDWAKKWE
HTKVVELLESSLSSPKVPYVDETALEKESEELNDEDRELLSVYHRTFDDDKIDRDLVISL
VGYICTSSQEGAILVFLPGYDDIISLRDALTSHREFGNSKRYQIFMLHSSMQPSEQREVF
RKLPHNTRKIVLSTNIAETSVTINDVVFVIDCGKVKEKSFDALTSVSSLHPVWVSKASAI
QRRGRAGRCSPGICFHLFSRVRFENLLEYQIPELLRTPLQELCLHTKLLASPNTSIADFI
SKAPEPPPFLVLRNAVALLKTIDALDQWEDLTDLGRHLADLPLSPHLGKMVLYSVVLKCL
DPVVTIACALAYRDPFVLPMYSAEKRAAAAARKKLILDPFSDHLVFVQVFRAWQRARSQG
HDKSFCHRNYLSQATLEMMAGMRSQILGQLKVAGFIRPRGAGDIKDLNTNSNNFAVVKAA
LCAGTFPLLARVDRSRSKLTTQKENSARFHNSSIMNQPPSHGESMSSAQAKSIARLPSDW
LIYEEMTRLYTTVTVKCCTLVSPVTVALFTGPSLSSEHVMDSLSSRDGDRYLGEGFIRES
ESSDSETDDGTGGEKNKDKGVSFKVDEWIALSGNQEIVKLVWYLRHKLQALVIRRIRSPS
RPWSQVDEMVVRAVAAVLTAEEHVLNPSLYPRQRRTRPGIESAADLRTRKERSHLAVQFS
PSREQLQELSGSLAKSERSVSPHHASKASGEGWTTPPTQQRDARYFIMKCNNQRNLDISM
AKGIWATTLANEKKLNRAFKETKLVVLIFSVQGSGHFQGYAHMTSVIGKEKSPEFGSTSL
SGVFSVEWIKKANIPFQQAHHLVNPWNDHKKVQISRDGQELEPKIGEELCKLWDADNSSQ
GGRTPRTNNSINRRGKPSVQSDPHPTPSQWQSSQPNLGYTAMQQVYTAHTPSLPIPVPIP
SPRHTVPAHYPGHQVVTPQPMAVHTHPSVPFGAQAAVLQSQFHATAPRFTGALPQTPNAR
TMGPPPRGSRGPFNASRK
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggcgtcttccggatcacccaagaagactagaaggcagtccgaaatttgcgtt
aaagaagagtttaagatcgctgttaaaatagcgcttgatagattccgctttcaagagaag
cagaaagtcctggagtttccgtcgtcttttacatcactggaaagggcttatattcacaga
atgtgtcagaatataggacttgcctctcaaagccaggggaaaggaaggaacagatatctc
acagtttcaaagaaagatgtcaacactggaaattacagcagcattttgaagctctctagc
aatgcttgccaacacattgaacatcttgcaaagaagtttcctttaaatataaaggagaga
caagaacttcaaccaaaaaccgaaagatcaactgcgacatttgattcaggtcgaagttca
agagaaaataaggttgttggcaaattgaacaataacatgccagctattccccctgtggca
aaaccaaatgaattctcttcgattcgtaaatctctaccaatttatgaactgcgggagcag
attttaaagcttatttcagagaatcaggttatccttatatcaggtgagactggttctgga
aagacaacacaggttccacagttcatacttgaagatgccaatactcaaggtacgcagtgc
cggatagtttgtactcaacctcgaaggatctcagccttatcagttagtgagagagtagca
actgaaagaggagaaagacttggtcagactgtcggctatcaaataagacttgataacaga
atatcgccaaaaacattgttgacatactgtacgactggagtgctgttgcaaacgctgatg
tctggtgacaactctctgtcatttgtcacacatgttatagtggatgaaatacatgagcgg
gatagatttacagattttctgctgattgctgtcagagatcttcttgctgtaaacagacga
ctcaaattgatcttaatgagtgctgcattagatatccaactattcattgactactttgga
aaatgtccagtggtaaacgttcctgggagatgctttgaggtaaaagaatacttcctggaa
gatgtactgaaaatgacatcatattgtagtgacgagatggccaggcatctgaaagacaca
tcaaaagcacaaatcaagactgaaacagaatgtgctgattctgtgatgaatcgtaaatca
acttcagtaaaagaaaaccttgacgaggccaaaattgctgaaaagaataatgaggctgaa
aaaatagaaaaaacagtggaactttgctctcttgataaagtggacttggaaccagaggaa
ctgtttgatgaagaacttcaaccaagaggagatattgacctggaagaagattcagattcc
aaaatagctgggaatgcgcaaggaaaggattatcttgaagctgctgacttcccactggac
gaagaactcactgatggtgaggtcatggagcaggatattttactagaagatgatgatgac
aatgaaggagccaatgaggatgtagatgacgatgaagaggatgaagaagttgtagtggaa
gaggagaacaatgatgatgacgaaatcaaagaagtggaagaaggagtagaagttttgaaa
ctggaggatgaagtggagaatggcagcgcgcaaactgaggaggttaacagtgaggataaa
caagatgatgaggaaagttacaatgaagagcagtatctgagagaggaaatggataacagt
atatcagaggcatggcttaatgggagtgaggatgcatttgtacagattctttacttagtt
atgcaggaaaatataagtgtggattatcagcattcagagacccaggccacccctctaatg
gtagcatcaggtagaggctgtgccagtgttgtcgaacaactgctcaacttaggagcaaat
ccacacatcaaggaacccaagaatggctggactgcaattgactgggccaagaaatgggaa
cacacaaaagtggttgaacttcttgagtcatcattgtcatcacctaaagttccgtatgtt
gatgaaacagctctcgaaaaagaatcagaggagctaaacgatgaagacagagagttgctc
tcagtttatcacaggacatttgatgatgataagattgatcgtgatcttgttattagtttg
gtgggttacatctgtaccagttcgcaagaaggagctattttagtgtttcttcctggttat
gatgatattatctcactgcgggatgccctgacttcccatagggagtttggaaattcaaag
aggtatcaaatcttcatgctacattcctccatgcaaccttcagaacaaagagaggttttc
agaaagctacctcataatacaaggaagattgttttgtccacaaacattgctgaaacaagt
gtgacaatcaatgatgttgtgtttgtgatagactgtggaaaagttaaagagaaatcattt
gatgctttgacttctgtttcctcgttacacccagtgtgggtgtccaaagctagcgctatt
caaagaaggggaagggctggcagatgctcccctggcatttgctttcatttatttagccgt
gtacgatttgaaaatttgttggaatatcaaatcccagaattgttaagaacaccattacag
gaactctgtcttcataccaagctcttagcatccccaaatacatcaattgctgattttata
tcaaaagcaccagaaccacctccatttttggtgctaagaaatgctgttgccttattaaag
actattgatgctttggaccaatgggaggatttaacggaccttggacgtcatcttgcagac
ttgcctctcagtcctcatttgggaaagatggttttgtattcagttgtgctcaagtgtctg
gaccccgttgtgacaatagcttgtgctttagcttacagagatccattcgtccttccaatg
tactcagctgagaagcgtgcagctgctgcagctaggaaaaagttgattttggatcccttc
agcgatcatttagtctttgtgcaagtctttcgagcctggcaacgtgcaagatctcaagga
catgataagagcttctgccataggaattatctttctcaagccacgctagaaatgatggct
ggtatgaggtcacagattctaggtcagttgaaagttgctggtttcattcggccacgtggt
gctggagacataaaggacttgaataccaattccaacaattttgccgttgtcaaggcagct
ctgtgtgcaggaacatttcctctcttagcccgcgtggacagaagcagaagcaagctaaca
acccagaaagaaaacagtgcacgttttcacaattcttccataatgaaccagcccccatca
catggtgaaagcatgtccagtgcacaagctaaatccattgcaaggttgccatcagactgg
ctgatttatgaagaaatgacaaggttgtacaccacagttacagtaaaatgctgcactctg
gtctcacctgtaacagtggcactcttcactggcccaagcctgtcatctgaacatgtcatg
gactccttgtcctctcgagatggagatagataccttggagaaggcttcatacgggaaagt
gaaagcagcgacagtgaaacagacgacggcacaggaggagaaaagaataaggacaaaggt
gtttcgttcaaggtggatgagtggattgcactttctggcaaccaagagattgtaaaactt
gtgtggtatttgcgccacaagttacaagcactagtgattagaagaattcgatctccatca
agaccatggtcacaagttgatgagatggtggtacgtgctgtagcagcagttttgacagct
gaggagcatgtcttgaacccatcgttgtaccctcgccagcgacgaacacggcctggtatt
gaaagtgcagctgacttaagaacaagaaaagaaaggtctcacttagcagtacagttttcg
ccttctagagagcaacttcaagaattatcagggtctctagcgaaaagtgaaagatctgtg
tccccacaccatgctagcaaagcatcaggggaaggctggacgacacctccaacccaacaa
agagatgctcgttactttatcatgaaatgcaataatcaacgcaacttagacatctccatg
gccaagggcatttgggcaacaacattggccaatgaaaagaagcttaacagagcattcaaa
gaaaccaaactcgttgttctcatcttttctgttcaagggagtggccattttcaaggctat
gcgcacatgacttccgtcattggcaaagaaaagtctccagagtttggatcaacttcactt
agtggagtgttcagtgtggaatggataaagaaagctaatatcccatttcagcaagctcat
catttggtaaacccatggaacgaccacaaaaaagttcaaatcagtcgcgatggccaggag
ctagaacccaagattggtgaagagctttgcaagctgtgggatgcagacaattccagtcag
ggtggacgcactccgaggacaaacaatagcataaacaggcggggaaagccctcagtacaa
tcagatcctcatcccacccctagccagtggcagagttcacagccaaaccttggctacact
gcaatgcagcaggtgtatacagctcacaccccttccctccccatccctgtaccgattcca
tctcctcgacacaccgtccctgcccactatcctggtcatcaagttgtgacaccacagccc
atggcagtccatacacatccaagtgttccctttggagcccaagcagcagtgttacagtct
cagtttcatgcaacagccccaagattcactggagccctccctcagacacccaatgcaagg
acaatgggaccacccccacggggttcaagaggaccattcaatgcctcaaggaaataa
DBGET
integrated database retrieval system
