Acropora millepora: 114968749
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Entry
114968749 CDS
T06134
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amil
Acropora millepora
Brite
KEGG Orthology (KO) [BR:
amil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amil03016
]
114968749
Enzymes [BR:
amil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
114968749
Transfer RNA biogenesis [BR:
amil03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114968749
Prokaryotic type
tRNA splicing ligases
114968749
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
114968749
NCBI-ProteinID:
XP_029204821
LinkDB
All DBs
Position
10:19204833..19220976
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AA seq
508 aa
AA seq
DB search
MASAHRSYKEECSFIERLDQSSFRIKKGFVPNMKVEGIFYINDHLEKLMFDELKHWAGAQ
GVGGFLPGVKQIANVAALPGIVGKSVGLPDVHSGYGFAIGNMAAFDMSLSEAVVSPGGVG
FDINCGVRLLRTNLHERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALSMGMD
WSLREGYAWAEDKEHCEEYGRMLQADPSKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEI
FNTHAAKKMGVDHEGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIEVNDRQLACAR
ISSQEGQDYLKGMAGAANYAWVNRSTMTFLTRQAFAKIFKSNPDDLDMHVIYDVSHNIAK
IEEHILDGVQKSLLVHRKGSTRAFPPHHPLIPVDYQLIGQPVLIGGTMGTCSYVLTGTDI
GMRQTFGTTCHGAGRALSRAKSRRQLDYLEVLENLKTNGISIRVASPKLVMEEAPESYKN
VTDVVNTCHDAGISQKAIKLRPIAVIKG
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgctcatcgcagttacaaagaagagtgctccttcatcgaacgcttggaccaa
agttcttttcgtatcaagaagggttttgttcccaatatgaaggttgaagggatattttat
atcaatgatcatctggagaagcttatgtttgatgagttgaaacattgggctggagcacaa
ggtgttggagggtttctaccaggtgtcaaacaaattgcaaatgttgcagctttgccagga
attgttggtaaatcagttgggttacctgatgttcattctggctatggatttgctattgga
aacatggctgcttttgacatgtctctatcagaagcagttgtatcaccaggtggtgttggt
tttgatattaactgtggtgtgcgtctcctgagaacgaatcttcatgaaagagatgttcag
ccggtgaaggaacaacttgcacagtcactatttgatcacattcctgtaggtgttgggtca
aaaggcgtgattcctatgggagcaaaagatttggaagaagcactctcaatgggaatggac
tggtctctcagagaaggatatgcgtgggccgaagacaaagaacactgtgaggaatatggc
cgcatgttgcaagctgatccttccaaagttagcccgagagcaaagaaaaggggcttacca
cagcttgggacgcttggtgctggaaatcattacgcagaaatccaagttgtcgatgaaata
ttcaacacacacgcagctaaaaagatgggcgtggatcacgaaggacaggtttgcgtcatg
atacacagcggaagtagaggcctgggacatcaagtcgccactgatgcgttagttgcaatg
gaaaaggcaatgaaacgggacaaaatcgaagtcaacgatcgacagctcgcatgcgcaagg
atcagttcacaagaaggccaagattacctcaaaggcatggcgggagctgctaattacgcc
tgggtaaatcgctccactatgacattcctgacaaggcaagcttttgcaaaaattttcaag
agtaacccggatgatctcgacatgcacgtgatctatgacgtgtcacacaatattgcgaaa
atagaagagcatatcttagacggcgttcaaaaatctctccttgttcaccggaaaggctca
acgcgggcgtttccgccccatcatcctctcattcctgtagattatcagttgatagggcag
ccagttcttatcggaggaaccatggggacttgcagttacgttcttacgggaactgacata
ggaatgaggcagacgtttggcacaacatgccatggagcgggtagagcgttgtccagagcg
aagtcgcggaggcagcttgactatttggaggtgttagaaaatctcaaaacaaacggaatt
tccatccgagttgcgtcacctaagcttgtcatggaagaggctcctgagtcgtacaagaat
gtgacggatgtcgttaacacttgtcatgatgcagggatcagtcaaaaggccatcaagctt
cgaccgattgcggttatcaaaggatga
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