Acropora millepora: 114969350
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Entry
114969350 CDS
T06134
Name
(RefSeq) RNA-splicing ligase RtcB-like
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amil
Acropora millepora
Brite
KEGG Orthology (KO) [BR:
amil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amil03016
]
114969350
Enzymes [BR:
amil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
114969350
Transfer RNA biogenesis [BR:
amil03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
114969350
Prokaryotic type
tRNA splicing ligases
114969350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
114969350
NCBI-ProteinID:
XP_029205500
LinkDB
All DBs
Position
5:complement(8229414..8236754)
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AA seq
451 aa
AA seq
DB search
MLLGSMFRWSVRGLLLSFERRFELVVPLSKREGIVKRISSYILLGDGKNNGAPVKAWVKG
VPVEKDATDQLLSLAKLPIIHSHVAAMPDMHLGKGACVGCVVATVNAIIPSAVGVDIGCG
MMAVRTTLSAKDLPHSLKNLRAAIEQAVPHGRTNQGGKGDLGAWKTSNIPKGVVKEWDKL
KKEYEYICSRQPMTKARNNANHLGTLGTGNHFIEACLDEEDRLWFMLHSGSRGPGNRIGT
VYIELAKNDMMKLDKRIKVDKDLAYLQEGSKNFDDYVFAVNWAQKFARLNRDIMMTNVLQ
AARSCQDFPAFEVDPTSKAVNCHHNYVNVEKHFGKEVFLTRKGAVSARVGELGIIPGSMG
ARSYIVRGKGNPESFHSCSHGAGRTMSRAKAKKTFSVEDHVRATQGVECRKDAGVIDETP
MAYKDIDDVMAAQGDLVDVVHRLKQVLCVKG
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgttattgggaagcatgtttcgatggagtgttcgaggccttctactttcctttgaacga
aggttcgagcttgtggttcctttgtctaaacgagagggaattgtaaagagaatatcttct
tacattctgcttggtgatggaaaaaataacggtgcccctgtaaaagcgtgggttaaagga
gtaccagttgaaaaagatgcaacagatcagcttctttccttggcaaagttgccaatcata
cattcacatgtggcagccatgcctgatatgcatcttgggaaaggtgcatgtgttggatgc
gtggtggcaactgtgaatgcaatcattccctcagcagttggagtggacattggctgtgga
atgatggctgtgagaacaacactatcagccaaagatctcccacattccctgaagaatctt
cgtgcggcaatagaacaagctgtgccgcacggaagaacaaaccagggtggtaagggtgac
cttggagcatggaaaacgagcaacattccaaaaggtgtagtaaaagaatgggacaagctg
aagaaagagtatgaatatatctgcagtcgacaaccgatgaccaaagcacgaaataatgcc
aatcatttgggaacactggggactggaaaccacttcattgaggcctgtctcgatgaagaa
gaccgcttgtggtttatgttgcactcagggtcacgtggtccaggaaacagaattggaaca
gtgtatattgaactggctaagaacgacatgatgaagctcgacaaacgaattaaggtcgat
aaagatcttgcctaccttcaagagggttcaaagaattttgacgattacgttttcgcggtg
aactgggctcaaaagtttgctcgtttaaatcgcgatataatgatgaccaatgtgctgcaa
gctgctcgctcatgtcaggattttcctgctttcgaggtggatcccacaagtaaagcagtg
aactgtcatcacaactacgtgaatgtggaaaaacactttggaaaagaagtatttcttaca
agaaagggagctgtttctgctcgagtcggagagctgggtattataccaggatcgatggga
gcgcggtcttacattgttagaggaaaaggaaaccccgaatcatttcacagctgtagtcac
ggtgcaggaagaaccatgtctcgtgcaaaagccaaaaagacgttctctgttgaggatcac
gtgcgcgccacccaaggagtggaatgtcgaaaagatgctggcgtcattgacgaaacacca
atggcatataaggatatagatgacgtcatggcagcccagggtgacttggtagatgtcgtg
catagactcaaacaagtcttgtgcgtgaagggttga
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