Acropora millepora: 122958319
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Entry
122958319 CDS
T06134
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
amil
Acropora millepora
Pathway
amil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122958319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amil03041
]
122958319
Enzymes [BR:
amil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122958319
Spliceosome [BR:
amil03041
]
Complex C
Other components
Step II factors
122958319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_DEAH11
IBR
Helicase_C
OB_NTP_bind
IBR_1
DEAD
AAA_22
RRM_1
KH_DEAH11_2nd
IBR_2
HA2_N
KH_DEAH11_1st
HA2_C
zf-RING_2
zf-RING_11
AAA_19
AAA_30
RRM_DEAH11
nSTAND3
KH_1
Helicase_RecD
ResIII
ATPase
ABC_tran
SLFN-g3_helicase
CC_BshC
Motif
Other DBs
NCBI-GeneID:
122958319
NCBI-ProteinID:
XP_044175028
LinkDB
All DBs
Position
4:complement(23624060..23629947)
Genome browser
AA seq
1655 aa
AA seq
DB search
MSKQKACRLVIKPPLRMNISGDIMTRYVQECVGNKFKFFLDKVECGDGKQYQFTFIFKSR
KQGREAAKILKENVKSTGEEIQISVLKEVEEDSSTAARTASFLVKCEREIQAKIEALTEH
HNIKVQEIVRRLEDLKVRKHVSLSEYEIISSKREALESKKRELEKQGEEFARFGCHVKDV
LHAQVGKAQASVEQAIKNLRNYLGRECHRLDAALPMYAKKSLIIETIKDNQVCVVLGETG
SGKSTQMTQYLYEAGFAEKGTIVCTQPRKVAATSLADHVAHEMGGVRGQIVGCHVGGNIQ
AGKTTRIMYATDHVLLNECLKDPNLSKYSCIIIDEAHERSIYSDLLLGMIKKTLTRRPDL
RVVITSATIDPSLFVSYFNECPVLKVSGRMFPVHVTWKDDSSHNFEDYLRAAVDTVREIH
HKEGQGDILVFLTSPAETERACENLSKLEPDTNLVCLPLHGKLRQEEQRKVFEFLPDKRK
VVFATNCAETSITIPGIKYVVDSGMVKEMKYDAKRNKSSLEVTTISKSSAEQRKGRAGRT
QEGKCYRLYSEDEYEALEDRSRPEILRVHLGQAVLKLLDLGIEDISQFDFVEAPPQESIE
LALKSLTSLGAIERGALTALGRKIARVPVEPRLAKLIFDGIDQNVGTESVALAAVATVSG
SLFFRMGSDKERELADSRKIRFCHNGGDLLTMLEVFRQYLKQPKAKRNKWAFDNSLNAKS
LRLTEETVKELKLALKHELDVIVPDAAFHENGNIDETMQRILIDCYVSNLAVYTGHEKTG
YRIVSSNQSVQIHPSSALNFLGATPQFVVFEQLLKTSRDFAINTTPIEESWLCEMISVGR
VSYTMDDLKSTVMSRTSLPCSPDLMKLAFGGSRRRVLGDLEEEVSKLCDDSFVVLEKDEK
VGQINVFALPIHVPKALYEVEKCLEQSRRVLRCEDKEESLKEGCEGTRIVWGPAGEVQDV
LMPHMYRTVTVNDVHDSQMVINRLKSFGEVVKHHLNEGDGKSRVFVTFKRSEDAYLAVKS
SSEASRDFSFDVRPNHSISNGVHSQVSGFRVEVKWCRRLAKGTGSIKFCTPEDYFHAFGR
LSPSRVIGTSLVKFQPDRIHPEQIFMRGLHPRASEENVKATIEGMVPSVKIKKIFIHRKP
EFETTDEEVALQKTSIEKYLLDFATEGKFSVYVRKPKSKDFEGQAYVTFEDFEEGQAALK
GLNGRAIPGFGILTLHCSLSTLLLCPRNVFIVIKDELDAIVTEVKQRFGTTFVLTKDQQQ
SKRVAVEIRSECADHFIRVTSIVSAILNGDEIDCKISKDVEFLLTDSAKKAIQTIQNETN
TVISQDWRNKVVRIHGQQDKREEAKRAINKFIGDLIASNSHFWQIGLRGPGMPRGLLKAL
FERFGVDLHGLQDISGVQNVTVEFRRHVLKIISSDEAQETIKGFVNECCENLPKNCPHQG
DNQTQSQAQLACGICLCDLEDTDEIYRLACCGHAYDKTCIIQQLKSAVVPLKCVTENCEE
PVVWKDLQNLLSQSERKKLLISSLDAYVRCNPDSVKYCPTPDCGTVYRVSSDGRSHKCGA
CSADICTSCHTQSHRGLTCAMFKSGRNVEEDFKEWMRKDPSNRKNCPQCNAPIEKNQGCN
HMECSQCKAHMCWLCLGVFRTGHEVYDHQSHCPNK
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaacaaaaggcatgtcgtttggtcatcaaacctccgctgaggatgaatatttct
ggagacataatgactcgctatgttcaggaatgtgttggaaacaaatttaagtttttctta
gataaagtagagtgtggagacggaaaacaatatcagtttacgttcatttttaaaagtaga
aagcaaggaagagaagcagcgaaaatattgaaggaaaatgtcaaaagtactggagaagaa
atacaaatctctgttttaaaggaagttgaagaggactcatcaacagctgccaggacagct
tcgtttcttgtaaaatgcgagagggaaattcaggcaaagattgaagcactaaccgaacac
cataatataaaggttcaagaaattgttcgccgtttggaagatttaaaagttcgcaagcac
gtcagtttaagtgagtatgaaataatttcatcaaaaagggaagctttggagagcaagaaa
cgggagcttgaaaaacaaggggaagagtttgcacgtttcggttgccatgtgaaagatgtt
cttcatgcacaagtgggtaaagcacaggcaagcgtcgaacaagctataaagaatctaagg
aattaccttgggagagaatgccacagacttgatgcagcccttcccatgtatgccaaaaag
agtttaatcattgagacgatcaaagataatcaagtttgcgtcgttcttggagaaactgga
tccgggaaaagtacccaaatgacacaatatctctatgaagctggttttgcagagaaaggc
accatcgtttgcactcaacctcgaaaggttgctgccacaagtttagcagaccatgtggct
cacgaaatgggaggcgttcgtggacagattgtaggttgccatgttggcggaaacattcaa
gcgggtaagactactcgaatcatgtacgcaacggatcacgttctcctgaacgagtgtctc
aaagatcctaatttgtccaaatattcttgcataattatcgacgaggcccatgaacggagc
atttattcagacctgcttctggggatgatcaagaagactctcacgcgacgccctgacctt
cgagtagtcataacctcagctacgattgatccttcactgtttgtttcatactttaacgaa
tgcccagtgttgaaggtgtccggtcgaatgtttccagtacatgtgacatggaaagatgat
tcgtcgcacaactttgaagattatcttcgagctgccgtagacactgtgagagaaattcac
cataaagaaggtcagggagatattctggtgtttcttacttcgccggcggaaacagaacgc
gcttgtgaaaatttgtcaaaattagagcctgacacaaaccttgtttgtcttcctcttcat
ggcaagctgcgccaagaagagcaacgaaaagtgtttgaattcctcccagacaagcgcaag
gtagtattcgcaacaaattgtgctgagacttccattacaattccggggataaagtacgtg
gtcgatagcggtatggtcaaggagatgaaatatgatgccaaaaggaacaaaagttcctta
gaggtcaccacaatcagcaagagttctgctgaacagcgtaaaggaagggccgggaggact
caggaaggaaagtgttatcgactttacagcgaagatgagtatgaagctttggaagacaga
tcaagacccgagattctaagagtccacctcggacaagcagtgctgaaactgttggatctt
ggaattgaagatatatctcagttcgactttgttgaagcgcctccgcaagagtccatagag
cttgcattaaaatcattaacttctcttggagccatagaacgtggagcgcttactgccttg
ggtaggaagatcgctcgagttcctgtggaacctcgtttagcgaagctaatttttgacggc
attgaccaaaatgttggcacagaatcagtggcacttgcagcagtggcaactgtaagtgga
agtttgtttttccgcatgggtagtgacaaagaaagggaacttgctgatagcagaaaaatt
cgtttctgtcacaatggaggcgatttgctgacgatgttggaagtcttcagacagtacctc
aaacagcctaaagccaaacgaaacaagtgggcctttgacaacagtttaaatgcaaagtca
cttcgcttgacggaggagaccgtgaaagaactcaaattagccttgaaacatgaactggac
gtaatcgtaccagatgctgcttttcacgaaaatggcaatattgatgaaacaatgcaaaga
attttaattgactgctatgtctcaaaccttgccgtatatactggccacgagaagacagga
tacagaatagtgtcaagtaaccagagtgtgcagattcacccttcctccgcgctaaacttc
cttggagcgacgccgcaattcgttgtctttgaacaattgttaaagacatctcgcgacttc
gctatcaacacaacaccgattgaagagagttggctctgtgaaatgatctcagtgggaagg
gtgagttataccatggatgatttgaagtcaaccgtgatgtcacgaacctcgcttccttgt
agtccagaccttatgaaattagcgtttggaggttcccgaagacgagttcttggagacttg
gaagaagaggtttcaaagttatgtgatgacagctttgttgtgctggagaaagacgaaaag
gttggacaaataaatgtcttcgccttaccgatacacgtacctaaagccctgtacgaagtg
gagaaatgcttagagcaaagtagaagagtactgaggtgtgaagacaaagaagagagccta
aaggagggatgtgaaggcaccaggattgtgtggggacccgctggtgaagtgcaagatgtt
cttatgcctcatatgtataggactgtcactgtgaatgatgttcacgatagccagatggtt
atcaaccgcttaaaatcatttggagaagttgtgaagcaccaccttaatgaaggggacgga
aagtctcgcgtttttgttacgtttaagaggtctgaagacgcatacctcgcagtcaaaagt
tcttctgaagcctctcgtgattttagctttgacgtgcgaccgaatcactccatttccaat
ggggtgcattcgcaagtgtctgggttcagggtggaagtgaaatggtgccgccgccttgct
aaaggcacgggatccataaagttctgcaccccagaagactactttcacgcatttggccgc
ctttccccttcacgggtgataggtacaagtttagtaaagtttcaaccagacaggatacat
ccagagcagatctttatgaggggactccatccgagagcaagcgaggaaaacgttaaggct
actattgaaggaatggtaccctctgtgaagataaaaaagatttttatccaccgaaaacca
gagtttgaaactacggatgaggaggttgcattgcaaaaaacatccatagaaaaatatttg
ctcgattttgccacggaggggaaattcagtgtttacgtgagaaagccaaaatcaaaggac
tttgaaggacaggcctatgtgacattcgaagactttgaggaaggtcaagcagccttgaaa
ggtctcaatggacgagccattccaggttttgggatactcaccctgcattgcagcctttca
actcttttgctatgccccagaaacgtgttcattgtcatcaaagatgagctggatgcaatt
gtgacggaggttaagcagaggtttggaacaacgtttgtgttgacaaaagatcaacagcaa
agcaaaagggttgccgtcgagattcgcagtgaatgtgccgaccactttattcgtgtgaca
agtattgtcagtgcgattctgaatggagacgagatcgattgtaaaatttccaaggatgtg
gaatttctcctcacagattcagcaaagaaagctattcagactattcagaacgaaacaaat
acagtgataagccaagattggcggaacaaggtggtcagaatccatgggcagcaagacaaa
cgagaagaagcaaagcgtgctatcaacaaatttattggcgatcttattgcaagcaacagc
catttctggcagatcgggcttcggggacctggaatgcctcgtgggttgctgaaagctctc
ttcgagagatttggtgttgatttacatggtctgcaagacatttctggtgtccaaaatgtc
actgttgaattccgacgtcatgttctcaagataataagctcagatgaggcccaggagacg
ataaaaggtttcgtgaatgaatgctgtgaaaatctgccgaaaaactgccctcatcagggc
gacaaccaaacccaaagccaagctcagttggcgtgtggcatttgcctgtgtgacttggag
gatacagatgagatttacagacttgcttgctgtggtcatgcctacgacaagacatgtatt
atccaacagttaaaatctgctgtggttccactaaaatgtgtcacagaaaactgcgaagag
cctgttgtatggaaagatcttcagaacctcctgagtcaaagtgagaggaaaaagctgctt
attagctcgttagatgcgtatgtcagatgcaatcctgactcagtgaaatattgtccaaca
cctgactgtggaacggtgtaccgtgtctcatccgatgggagaagccacaagtgtggcgca
tgctccgcagacatctgcacttcgtgccacacccagtctcacagaggtctaacctgcgct
atgtttaaatcagggagaaacgtggaggaggatttcaaggagtggatgaggaaagatcct
agcaatcggaagaactgtcctcaatgcaatgcaccaattgaaaagaatcagggctgcaat
cacatggaatgttcacagtgtaaggcgcacatgtgttggctgtgtttgggagtatttcga
actggacacgaggtttacgatcaccaaagtcattgtccaaataagtga
DBGET
integrated database retrieval system
