KEGG   Acropora millepora: 122964488
Entry
122964488         CDS       T06134                                 
Name
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
amil  Acropora millepora
Pathway
amil03030  DNA replication
amil03410  Base excision repair
amil03420  Nucleotide excision repair
amil03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:amil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    122964488
   03410 Base excision repair
    122964488
   03420 Nucleotide excision repair
    122964488
   03430 Mismatch repair
    122964488
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amil03032]
    122964488
   03400 DNA repair and recombination proteins [BR:amil03400]
    122964488
Enzymes [BR:amil01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     122964488
    6.5.1.6  DNA ligase (ATP or NAD+)
     122964488
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     122964488
DNA replication proteins [BR:amil03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    122964488
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     122964488
DNA repair and recombination proteins [BR:amil03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     122964488
   NER (nucleotide excision repair)
    Other NER factors
     122964488
   MMR (mismatch excision repair)
    Other MMR factors
     122964488
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 122964488
NCBI-ProteinID: XP_044183999
LinkDB
Position
12:complement(17473822..17492604)
AA seq 1042 aa
MIVKFLARRCCLVNRSIFHDIWRSFFQTNTSMAQRGITAFFSPTANVKTKSKKDGRNSKD
LSSTSNLKTKVETPVKTGLQSVEHDSPPVKKSRQQKARRILDDSSDEENCSGVEDKLSGK
HNGHVLEKKDTAVQKPTSSLKNGEMEDSKEKLKLIEVTSPANETTLVPKRKTAARKPTKR
KASSDHLSSDEGKSVKRVKSETASLQNGQVGDSNAEEKEAQEKTAENSIFEARALKSEPE
KNSQMEIENSAFDEAVDKNERMKIEGIDEGCEDDEKTVPENSSQEDSKQAEKPEERVTSK
CVNGDNSLVKKKEDGKQSRGENVKSEKKPKEAFSDFFSPKRSKKANEKEEKPVEKSKTKQ
LLQPSKKTSITPDKAMDEKSTVVVNPTEYSPDQNNYDPIKDACWKHGEKVPYLAVARTFQ
IIEDTSARLKITSTLSNFFRSVIVLSPDDLLPCVYLCLNKLAPAYEGMELGVGDNVLMKA
VAESTGRSLQQIKVDVGEKGDLGIVAESCRGKQRTMFAPPKLMAAGVFTKLQDIAKMTGH
SSMLRKTEKIKGMFVACRDSEARYLIRSLGGKLRIGLAEQSVLTALGHAVFLTPPCKEFP
PAVMDNAKNFSGEELKKKQDEAAMIVKTCYCEMPNYNKLIPSLLEHGLEALPRYCHLTPG
IPLKPMLAHPSKGVEEVFKRFEKAEFTCEFKYDGERAQIHVLDNGEINIYSRNQENNTSK
YPDIIARMPKVLGEGVKSCIIDTEAVAWDRDKKQILPFQVLSTRKRKDADASEIKVQVCV
YAFDLLYLNGKSFVKEAFRVRREALRSSFTEVEGEFMFAQSSDSVNTDDIAEFLDDSIKG
NCEGLMVKTLEVDATYEIAKRSHNWLKLKKDYLAGVGDTLDVVVIGGYLGKGKRTGSYGG
YLLACYDPENEEFQSICKIGTGFTDELLDQHHQFFKDHVISQPKAYYRYDDGLAPDHWFD
PVQVWEIRAADLSISPVHKAAVGLVDPVKGISLRFPRFLRIRDDKTAEQATDSSQVAEMY
RSQESVKNNTNPPSVPDADDFY
NT seq 3129 nt   +upstreamnt  +downstreamnt
atgattgtaaagtttttagcgcgaagatgttgtttagtaaatcgaagtatattccatgat
atttggagatctttcttccaaacaaacacgtcaatggcccaacgaggaatcaccgctttc
ttttccccaactgcgaatgtcaaaacaaaaagcaaaaaggatggaaggaatagtaaagat
ttatcaagcaccagtaatttgaaaacaaaagtggaaaccccagtaaagacaggtttacaa
tctgttgaacatgactctcctccagtcaagaagtccaggcagcagaaagcacgacggata
cttgatgatagcagtgatgaagagaattgttccggagtagaagataagctttcaggaaaa
cacaatggccatgtgttggagaaaaaagatactgcagtgcaaaaaccaacaagttcatta
aagaatggtgaaatggaggatagtaaagagaaactaaaactcatagaggttacatctcca
gctaatgaaactactcttgtaccaaaacgaaaaacagcagctagaaaaccaacaaagagg
aaggcttccagtgaccatttatccagtgatgaaggaaagagtgtcaaacgggtaaagtca
gaaacagcttccctacaaaatggtcaggttggagattcgaatgctgaagagaaggaagcg
caggaaaaaacagctgaaaactcaatctttgaagctagagctctgaaatctgaacctgaa
aaaaatagtcagatggaaatagaaaacagtgcatttgatgaggctgtagacaagaatgag
agaatgaagatagaaggtattgatgaaggttgtgaagatgatgaaaaaactgtcccagag
aatagcagtcaggaagattcaaaacaagctgaaaagccagaggagcgtgttactagcaag
tgtgttaatggggataattcacttgtaaagaaaaaggaggatgggaaacagagtcgaggt
gaaaatgtcaaaagtgaaaagaaacctaaagaggcattcagtgactttttctctccaaag
aggtccaaaaaggccaatgagaaagaggaaaaacctgttgaaaagagtaaaaccaagcaa
cttttgcaaccatcaaagaagacaagcattactccagataaagctatggacgagaagagc
acagttgtggtgaatccaacggaatattcaccagatcagaataactatgaccctatcaaa
gatgcttgttggaaacatggggagaaggttccataccttgctgtagccagaacatttcag
atcatagaagatacttctgcacggctgaagattacatccacactcagcaacttctttcgt
tcagtgatagttctgtcacctgatgatctactgccctgtgtttatctttgtctcaacaag
ctggctcctgcatacgaaggaatggaacttggtgttggagacaatgttctgatgaaagct
gttgcagagtcaacagggaggagtttacaacagatcaaggttgatgttggtgaaaaggga
gacttggggattgttgcagagtcttgtcgcggtaaacaacgcactatgtttgcaccacca
aagcttatggcagcaggtgttttcaccaagttgcaggacattgcaaagatgaccggacat
agttcaatgttgagaaagacagagaaaataaaagggatgtttgtggcctgccgagattcc
gaagcaagatacttgatcagatccttaggggggaagttgaggattggtctcgcggaacag
tcagttttaacagccttgggacatgcagtttttctcacaccaccatgcaaagagtttcct
cccgcggtcatggataatgctaagaatttctccggagaagaattaaagaagaaacaagat
gaagctgctatgatagtcaagacctgctactgtgaaatgccaaactacaataaactgatt
ccgtcacttttggagcacggcttggaagcgctaccccgttactgccatttgacacccggt
atccctctgaaaccaatgttggcacacccttccaaaggagtggaagaagtgttcaaacga
tttgaaaaagcggaattcacttgcgagtttaagtacgatggagaacgagcgcagattcat
gtgctggacaacggagaaattaacatttacagcagaaaccaagagaataatacctccaag
tatcctgacattattgcacgaatgccaaaggttttgggagagggcgtcaagtcgtgcatc
attgataccgaagctgtcgcatgggatcgagacaagaagcagattttgccctttcaagtt
ctcagcacaagaaaaagaaaggatgctgatgcctcggaaataaaagttcaagtttgtgtg
tatgcatttgacctcttgtacctcaacggaaaatcgtttgtgaaggaagctttccgtgtt
cgcagagaggcactaagatcttctttcactgaggtcgaaggggaattcatgtttgctcag
agttctgactccgtgaacacggacgacatagcagaatttttagatgattctatcaaagga
aactgtgaaggactgatggtaaaaacgctcgaagtagacgccacttacgaaattgctaag
cggtcgcataactggttgaaattgaagaaggactatttggctggtgtaggagatacgctg
gatgtggtagtgattggcgggtatcttggtaaaggtaaaaggactgggtcatacggaggc
tatctcttagcgtgttacgatccagaaaacgaagaattccagtccatttgtaagattgga
actggttttacggacgaacttctggaccagcatcaccagttcttcaaggatcacgtgatt
tcacaaccgaaggcgtactatcgctatgacgacggcttggcgcctgatcattggttcgat
cccgtgcaggtgtgggagataagagccgcggatctttcaatttctcctgttcataaggca
gcggtcggactggttgatcccgtcaagggaatttcgctacgatttccacgcttccttcga
atccgtgacgacaaaacagcggagcaagccacagacagctcgcaagtcgcggaaatgtac
agaagccaagaaagtgtgaaaaataacaccaaccctccttcagtccctgatgcagacgat
ttttattga

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