Advenella mimigardefordensis: MIM_c10100
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Entry
MIM_c10100 CDS
T03016
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amim
Advenella mimigardefordensis
Pathway
amim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIM_c10100 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amim03019
]
MIM_c10100 (recQ)
03400 DNA repair and recombination proteins [BR:
amim03400
]
MIM_c10100 (recQ)
Enzymes [BR:
amim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MIM_c10100 (recQ)
Messenger RNA biogenesis [BR:
amim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MIM_c10100 (recQ)
DNA repair and recombination proteins [BR:
amim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MIM_c10100 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Herpes_U5
LysM
Motif
Other DBs
NCBI-ProteinID:
AHG63108
UniProt:
W0PDJ2
LinkDB
All DBs
Position
1152053..1153882
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AA seq
609 aa
AA seq
DB search
MSDSTSPLSVLKRVFGYDSFRGEQQAIVEHLIAGHDALVLMPTGAGKSLCYQVPALIRPG
TAVVVSPLIALMQDQVDALRELGVRAAFLNSSQEWEAIREVENAFARGELDFLYVAPERL
LTDRCMRLLERGRIALFAIDEAHCVSQWGHDFRPEYLGLSRLHEQWPDVPRIALTATATP
QTRDEIAQRLGLTQARHFVAGFDRPNIRYTIVEKNDVRRQLLGFIREEHAGDSGIVYCLS
RNKTEDTAEFLCREGIDAMAYHAGLPAELRAQRQARFLRDDGVVMVATIAFGMGINKPDV
RFVAHIDLPKSVEGYYQETGRAGRDGLPATAWMAYGLQDVVQQRKMIDDSTGDEFFKRRS
GAQLDAMLALCETVQCRRTLLLAYFGQQSQACGNCDVCLTPPQTWDGTVAAQKILSAIYR
LHRERDQRYGAGHLIDILRGKRTEKVAQHSHDTLSVFGVGQDVSEQGWRSVLRQLMAANI
VTVDGDGYGTLALTEKSRGVLKGEQVLMMRKESARAAARSRNIMPRGKREVRVLSAAAQA
RFESLRQWRRDIAKEHGVPAYVIFKDDTLAQIAEQEPSTLDDLAAVNGVGQHKLDTYGEA
ILNFLDELE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgattccacctccccgctgtctgttctgaaacgtgtatttggttacgattccttt
cgtggcgagcagcaggccattgtcgaacatctgatcgccggtcatgatgccctggtgctg
atgcctaccggcgccggtaaatcgctgtgctatcaggtaccggcgctgattcggccgggt
acggcagtcgtggtgtctccgcttattgcgctgatgcaggatcaggttgatgccctgcgc
gaactgggtgtccgcgccgcctttctcaattccagccaggaatgggaggccattcgcgag
gtggagaacgcgtttgcacgcggtgagctggattttctctatgtggctcccgagcgcctg
ctgaccgatcgctgcatgcgcctgctggagcggggccgcattgccctgtttgcgattgat
gaagcccattgcgtttcgcaatggggtcacgatttccgccccgaatacctgggcctgtcc
cgcttgcatgagcagtggccggatgtaccgcgcattgcgctcacggccactgcaacaccg
cagacccgcgatgagattgcgcaacggctgggcctgacccaggcaagacatttcgtggcc
gggtttgatcgccccaacatccgctataccatcgttgaaaaaaatgatgtgcggcgtcag
ttactgggctttattcgcgaagaacatgcgggcgactcgggtatcgtgtattgcctgtcg
cgcaataaaaccgaagacacggcggagtttctctgcagggaaggcattgacgccatggcc
tatcacgccggcctgccggcagagttgcgggcgcagcgacaggcgcgcttcctgcgcgat
gatggggtggtcatggtggccacgattgcatttggcatgggcattaacaagcccgatgtg
cgttttgtggcgcatatcgatttgcccaagtcggttgaaggctactaccaggaaaccggc
agagcggggcgcgatggcttgccggccacggcctggatggcctacgggctgcaggacgtg
gtgcagcagcgtaagatgatagacgactccacgggcgatgaatttttcaagcgccgttcg
ggggcgcagctggatgccatgctggccctgtgcgaaaccgtgcagtgccggcgcaccctt
ttgctggcctatttcggacaacagtcgcaggcctgcggcaattgtgatgtttgtctgaca
ccgccgcaaacctgggatggcaccgtggcagcacagaaaatcctgtctgctatttatcgg
ctgcatcgtgagcgcgaccagcgttacggcgcagggcacctgattgatatcctgcgtggt
aaacgtacagaaaaggtagctcagcattcgcatgacaccctgtctgtttttggtgttggt
caggatgtgtccgagcagggctggcgcagtgtgttgcgccaattgatggcggccaatatt
gtgacggttgatggcgatggttacggcacactggcactgaccgagaaaagccgcggcgtg
ctaaagggtgaacaggtgttgatgatgcgcaaggaatctgcccgcgctgccgcaagatca
cgcaatatcatgcctcgtggcaagcgtgaagttcgcgtgctgtcagcggcggcgcaagcg
cgttttgaaagcctgcgacaatggcggcgtgacatcgccaaagaacatggcgtgccggct
tacgttattttcaaggatgacacgctggcgcaaattgccgagcaggagcccagcaccctg
gacgatcttgccgccgtcaacggtgtcgggcagcataagctggatacctatggcgaagca
attctgaactttctggatgaactcgaataa
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