Advenella mimigardefordensis: MIM_c12190
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Entry
MIM_c12190 CDS
T03016
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
amim
Advenella mimigardefordensis
Pathway
amim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIM_c12190 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amim03019
]
MIM_c12190 (pnp)
03016 Transfer RNA biogenesis [BR:
amim03016
]
MIM_c12190 (pnp)
Enzymes [BR:
amim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
MIM_c12190 (pnp)
Messenger RNA biogenesis [BR:
amim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MIM_c12190 (pnp)
Transfer RNA biogenesis [BR:
amim03016
]
Prokaryotic type
tRNA degradation factors
MIM_c12190 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
DUF5813
KH_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AHG63315
UniProt:
W0PD29
LinkDB
All DBs
Position
1382350..1384512
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AA seq
720 aa
AA seq
DB search
MFNKVTKSFQYGDQTVVLETGEIARQASGAVVASMGDSVVLATVVAAKNAKPGQDFFPLT
VDYVEKTYSAGRIPGGFFKREGKPTEKETLTSRLIDRPLRPLFPEGFYNEVQVIVHVLSV
DPQIDPDIAALIASSAALAVSGIPFDGPIGAARVGYKNGQYLLNPTQDQLADSEMNLVVA
GTENAVLMVESEAQQLSEEVMLGGVVYGHEQMQAAINAIHDLVAEAGKPEWDWQPEAKNE
ALIAAVTAAAEAGLKSAYEIRQKQERTTKLREVTAAVKQTLAEQAEQAGQPAPDGVAVDN
ILFDLESKIVRGQILAGEPRIDGRDTRTVRPISIRLGVLPRTHGSVLFTRGETQALVIAT
LGTKQDEQIIDSVMGEHRDRFMLHYNMPPFATGETGRFGAPKRREIGHGRLAKRALVSTL
PAHEDFQYTIRIVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLIKDGGKF
AVLTDILGDEDHLGDMDFKVAGTKNGITALQMDIKIQGITKEIMQVALAQARDGRMHILG
KMTEALTGSRQELSTFAPRMLSMKINPEKIRDVIGKGGATIRALTEETGCHIDISDEGVV
TISSADLEQAKEAERRIAELTAVVEVGQVYEGTVQRLLDFGGIVQILPGRDGLLHISEIA
NYRIANINDVLSVGQKVKVKVIEADDRGRLRLSAKALGGLEGAQENAPAEAGEQSDKPAE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacaaagtgaccaagtcgtttcagtatggcgatcagacagttgtactggaaacc
ggcgaaatcgctcgtcaggcttcaggcgccgttgtggcttcaatgggtgatagtgtggtg
ctggccaccgttgttgctgcaaaaaatgccaaacccggccaggattttttcccgcttacc
gtcgattatgtagagaaaacctattctgccggtcgtattcccggtggttttttcaaacgc
gaaggtaaaccgacagaaaaagaaacactgacgtcacgcctgatcgaccgtccgctgcgt
ccgctgtttcctgaaggcttctacaatgaagtgcaggtgattgttcacgtgctgtcggtt
gatccgcagatcgatcctgatatcgctgcattgatcgccagttctgccgctttggctgtc
tctggcattccatttgatggccctattggtgctgcacgtgttggctataaaaacggtcag
tatctgctgaacccaacgcaggaccaactggctgattcagaaatgaacttggtggttgcc
ggtactgaaaatgcggtgctgatggttgagtctgaagcccagcagctgtccgaagaggtg
atgctgggtggcgtcgtatatggccacgagcaaatgcaggcagccattaacgctatccac
gatctggtcgccgaagctggtaaacccgagtgggactggcagcctgaagccaaaaacgaa
gcgctgattgctgcggttaccgccgctgccgaagccggcctgaaaagcgcctatgaaatt
cgccagaaacaggaacgtacaacaaagctgcgtgaagtgactgctgcggttaagcaaacg
ctggctgaacaggcagagcaggctggtcagcctgcccccgacggcgttgcagtagacaat
attctgtttgatctggaatccaagattgttcgtggtcagatcctggccggtgaaccccgc
attgacggtcgtgacacccgtacggtacgtcctatctctatccgcctgggcgtgttgcca
cgtactcatggtagcgtactgttcactcgtggtgaaacgcaggcgctggtgatcgccacg
ctgggcaccaagcaggacgaacaaatcattgactcggttatgggcgagcaccgcgatcgt
ttcatgcttcactacaatatgcctccgtttgcaacgggtgaaaccggtcgtttcggtgcg
ccaaaacgccgtgagatcggccatggccgtcttgccaagcgcgcactcgtgtctacactg
cctgcgcacgaagacttccagtacaccattcgtatcgtatctgaaattacagagtccaac
ggttcttcatccatggcttccgtttgcggtggctcactggcgatgatggatgccggtgtg
cctgttaaagatcacgtggcgggtgtggccatgggcctgatcaaggacggcggcaagttc
gctgtgctgaccgatattctgggtgatgaagatcatctgggcgatatggacttcaaagtg
gcaggtaccaaaaatggtattactgctttgcaaatggatatcaaaattcagggtattacc
aaggaaatcatgcaggttgcgctggctcaggcccgcgacggccgtatgcatatcctgggc
aaaatgaccgaagcgcttaccggttcacgccaggaattgtctacttttgcaccacgcatg
ttgtccatgaaaatcaatccggaaaaaatccgtgacgtgattggtaagggcggcgccacg
attcgtgcgctgacagaagaaaccggttgccatatcgatatcagcgatgagggtgttgtt
accatttccagcgccgatctggagcaggctaaagaagcggaacgccgtatcgccgagctg
actgctgtggttgaggtgggtcaggtttacgaaggcacggtacagcgtttgctggacttc
ggcggtatcgtacagattctgccaggtcgtgacggcttgctgcatatttctgaaatcgcc
aactaccgcattgccaacatcaatgatgtgctgtcagtcggacagaaagtcaaggtcaag
gttattgaggcggatgatcgcggtcgtctgcgtttgtcagccaaagccctgggcggactg
gaaggtgcacaggaaaatgcacctgcagaagctggcgagcagtctgacaagcctgcagaa
taa
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