Advenella mimigardefordensis: MIM_c16120
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Entry
MIM_c16120 CDS
T03016
Name
(GenBank) putative excinuclease Cho
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
amim
Advenella mimigardefordensis
Pathway
amim03030
DNA replication
amim03430
Mismatch repair
amim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MIM_c16120
03430 Mismatch repair
MIM_c16120
03440 Homologous recombination
MIM_c16120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amim03032
]
MIM_c16120
03400 DNA repair and recombination proteins [BR:
amim03400
]
MIM_c16120
Enzymes [BR:
amim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MIM_c16120
DNA replication proteins [BR:
amim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MIM_c16120
DNA repair and recombination proteins [BR:
amim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MIM_c16120
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
Cho_C
GIY-YIG_UvrC
UvrC_M
GIY-YIG
Rv2179c-like
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AHG63695
UniProt:
W0PEL9
LinkDB
All DBs
Position
1842555..1843967
Genome browser
AA seq
470 aa
AA seq
DB search
MSSQTLSAPTPDRPFAFVDVETTGGSASTDSLTEIAIVRYDGHTISTWQSLINPECRIPG
YIESLTGITNQMVANAPTFAQLAEQIQQLLAGHILVAHNARFDYGFIKNAFRRAGRDYKA
TMLCTVKLSRRLYPQHQRHGLDYLIQRHGLIMQDRHRAYDDAYALLQFWQCVCREHDHKI
IDDVVQGLIARPSLPPHIDSAEIDALPNSFGVYIFYGENELPIYIGKSNRLRQRVLSHFA
SDHTAPKEMKISMQIRRIEHIRCAGEVDALLTESHMIKERMPTLNRQLRRQKEVFTWQLA
EQSPGLWVPVLLGGNDIAIGQGRHLYGLFSSARDAKEALLAVVKSEKLCKATLGLEKVHN
GSPCFARQLKACTGACVGQESHMAHSVRLMTALSALRLRDWPFEGAALLREGNLVHVIHH
WCYLGTARDEAALQELLAEGKGDFSRDTYRILVKHRDKLIDAGAASLALE
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtccagccaaacactcagcgctcctacgccagaccgaccctttgctttcgtcgatgtt
gaaacgaccggcggatcggcatccaccgacagcctgaccgaaatagccattgtgcgctat
gacgggcacaccatcagcacctggcaaagcctgatcaacccggaatgtcgcatcccgggc
tatatagaaagcctgacagggatcacgaaccagatggtggccaatgcccccacctttgcg
caactggcagagcagattcagcaattgcttgccggacatatcctggtcgcccacaacgcc
cgctttgattatgggtttatcaaaaatgccttccgacgggcggggcgcgattacaaggca
acgatgctgtgtaccgttaagctatcgcgccgactctatccgcagcaccagcgccatggg
cttgattatctgattcagcggcatggcctgatcatgcaggacaggcaccgtgcctatgac
gatgcctatgcattgttgcaattctggcaatgcgtctgccgcgagcatgatcataaaata
attgatgacgtcgtgcaggggctgatcgcgcgaccctcgttgccgccacacattgattcg
gccgagatcgatgccttgcccaatagtttcggcgtttatatcttttatggtgagaacgaa
ctgccgatctacattggtaagagtaatcgactgcgtcagcgcgtcctgtcccattttgcc
agcgatcacacggcacccaaggaaatgaaaatttccatgcagatccggcggattgaacat
attcgctgcgccggcgaagtggatgcactgttgactgaatcgcacatgatcaaggaacgc
atgcctactctgaatcgccagttgcgcagacaaaaagaggtatttacctggcaactggca
gagcaatcgcctggcttatgggtacccgtgcttttgggcggcaacgatattgcgatcggg
caggggcggcatttatatggcctgttttcatctgcgcgggatgccaaagaggcgctgctg
gctgtcgttaaaagtgaaaaattgtgcaaggcaacgcttggattggagaaagtacacaac
ggcagcccatgttttgcacggcaattgaaggcatgtaccggcgcctgcgtagggcaggag
tcgcatatggcgcattcggtccggctcatgaccgccttgtctgcgttacggctacgggac
tggcccttcgaaggtgccgcgttgttgcgcgaaggtaatctggtacatgtgattcaccat
tggtgttatttgggaacagccagagatgaagcagcgttgcaggagttgctggcggagggc
aagggcgatttttcgcgggatacctatcggatactggtgaagcatcgtgacaaactgatc
gatgccggggctgccagcctggcgctggagtaa
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