Advenella mimigardefordensis: MIM_c29480
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Entry
MIM_c29480 CDS
T03016
Name
(GenBank) putative ribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
amim
Advenella mimigardefordensis
Brite
KEGG Orthology (KO) [BR:
amim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amim03016
]
MIM_c29480
Enzymes [BR:
amim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MIM_c29480
Transfer RNA biogenesis [BR:
amim03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
MIM_c29480
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
TraI_2
Motif
Other DBs
NCBI-ProteinID:
AHG65012
UniProt:
W0PGU0
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All DBs
Position
3361821..3363725
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AA seq
634 aa
AA seq
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MYVVFEDDGSFKAEKIHSEADSTLQVESVSGKRSKIKRNAVIFTFDGIEPQTMLEQARAT
SEDIDLQFLWECAPQDEFSAQDMALEYVGHEPSITEKTAILLRLHSAPAYFHRKGKGHYK
AAPADILQAALAALEKKQRQAEQQQAWTNAMLAGTLPEDLRDAARTFLIRPDKNTLQWKA
FEKALDESGKSAETLLLELGVYPHALALHLDRFLKQHFPKGTEVPELDIPAIPALPSSDV
LAYSIDDISTTEIDDALSATHIDGDLYRIGVHIAAPALVVTRDSDLDKLARNRMSTLYMP
GDKIPMQSDSLISMFSLDAGRPVPALSLYVTANIATGEIHETVTRAETVTIRENLRLDDL
LDQVTREALEDPAAELPYAELFRPLWQLGQHLKTAREQVRGKPESNNRTEYTFRLHGPAN
DPESRIELIPRQRNAPLDQIVAEYMILANTQWGGYLNEHGLPGVYRSQQMGRTRMSTHPL
PHESIGVPQYAWCTSPLRRYVDLVNQRQILAAAEHGVSARLVAPFKPKDADLYAIIGAFE
SQYTLWHEFQSRLERYWCLRWLTQQSRSSLHGTFIRDNLVRLEEIPLVIEVNGVPELERN
DRMIINVRGTDELSLHIDAEYAGLAQADTEAAAT
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtacgtggtttttgaagacgacggcagcttcaaggctgaaaaaattcattccgaagcc
gattcgacactccaggttgaatcggtcagcggtaaacgcagcaaaatcaagcgcaacgca
gtcatttttacctttgatggcatagagccacaaaccatgctcgaacaggcacgggcaaca
agcgaagacattgacctgcaatttctgtgggaatgcgcgccgcaagatgaattttcagct
caggacatggcgctcgagtatgtcgggcacgaaccgtccattaccgaaaaaacagcgatc
ctgttgcgcctgcatagtgcgccggcctactttcaccgcaagggcaaaggccattacaag
gcggcgccggcagatattttgcaggcggcactggccgcgctggaaaagaaacagcgtcag
gcagaacagcagcaggcctggaccaatgccatgctggccggtacgctgccagaagacttg
cgcgatgccgcccgtaccttcctgatccgcccggacaaaaatacactgcagtggaaagcc
ttcgagaaggcgctggacgagagcggcaagtctgccgagaccctgctgctggagctgggc
gtgtatccgcacgcgctcgccttgcatctggatcgattcctcaaacagcactttcccaaa
ggaaccgaggttcccgaactggacattccggccatacccgcgctgccatccagcgatgta
ttagcctattcaatcgacgacatcagcactaccgaaattgatgacgccctgtcggcaaca
catatcgacggtgatctgtaccggattggcgtgcatattgccgcgccggcgctggtggtt
acacgcgattcggatctggacaaactggcgcgaaatcgcatgtccacactctatatgccc
ggcgataagattcccatgcaaagcgacagcctgatcagcatgttttcgctggatgctggc
agacccgtgccggcgctgtccctgtatgtcacggccaatattgccaccggcgagatccac
gaaacggtcacccgcgccgaaaccgtcacgattcgcgagaacctgcgcctggacgatctg
ctggatcaggtaacccgtgaagcgctggaagatccggcagccgagttgccttacgcagaa
ttattccgcccactctggcaactgggccagcacctgaagacggcgcgcgaacaggtgcgc
ggtaaaccggaaagtaacaaccgtacggaatataccttccgcctgcacgggccggcaaat
gaccccgagtcgcgtattgaactgattccgcgccagcgcaatgcaccgctggatcaaatc
gtggccgagtatatgattctggccaacacgcagtggggcggttatctcaatgagcatggc
ctgcccggcgtataccgctcgcagcaaatggggcgtacgcgcatgtctacccatccgctg
ccacatgaatccatcggcgttccacaatatgcgtggtgcacatcgcctctgcggcgttat
gtggatctcgtgaaccagcgtcagattcttgccgcggccgaacatggcgtttcggcgcgt
ctggttgcgccattcaaacccaaagacgcagatttgtacgccattatcggcgccttcgaa
tcccaatacacgctctggcacgaattccagagccggctggaacgctattggtgtctgcgc
tggctaactcagcagtcccgcagcagcctgcacggcactttcattcgtgacaatctggta
cgcctggaagaaatcccgctggttatcgaagtgaacggtgtaccggaacttgaacgtaac
gaccgtatgatcatcaatgtacgcggcaccgatgagctgagcctgcacattgacgcagaa
tacgccggactggcacaagcagacaccgaggcagccgcaacatga
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