Advenella mimigardefordensis: MIM_c35070
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Entry
MIM_c35070 CDS
T03016
Name
(GenBank) putative type VI secretion system YD repeat-containing Rhs element Vgr protein
Organism
amim
Advenella mimigardefordensis
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Phage_GPD
RHS_repeat
Gp5_trimer_C
RHS
Phage_base_V
DUF6531
DUF6484
Motif
Other DBs
NCBI-ProteinID:
AHG65567
UniProt:
W0PIA9
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(4034919..4040960)
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AA seq
2013 aa
AA seq
DB search
MNRTVNATTPLGDKLKFKSLKGHEQLSDLFEWTVEFVSDSPGLVLEDLLGKTISLEVETS
AAPRYMHGVITAFKLVHRETQTRRYYIYEATVRPWLWYSTQVTDNRIFQDQTAVQIITQV
LQAYDYPIENRLVGQYRKWGYSVQFQESDFNFISRLMEHEGIYYWFRHEKDQHVLVLMDD
AHSHAPLPVMPDIPFYPDDTRSVPLEEYIRDWQIAGELTPTTYSTMDYDFQKPQAEMSAR
RWVKNQNTQGLDLDWYDPMGGYVDSADSDHYARVHLESMQCLQEQAWAVSNVRNLAPGYT
FSLKYYPNSEENKSYLILRAEYDFRDPSYASAGGVQENATFVIRSQHIPASVQFRAPRST
PAPRMSGPQTATVVGPDGQEIWTDKYGRIKVQFHWDRQGAMDENSSCWLRVSSPWAGGGF
GGVQIPRVREEVVVDFINGDVDRPIAVGRVYNASNMPPVSLPENATQSGFLTRTKNGTPE
NANKMLFEDSQGNELLSMVAEKDMNTHVKNNQQHDVVGNAVSSIGGLRSHTAHSTSSITM
ASGAVKSYQSNHNRTVQASLDDSVGGNLEQTLSDGVDETITGAHSHTVSGAASHQLLGLH
VNTTTQDVETVNGTVTETVSADETTNVTSSSELEAADITLETPSLYKESTKQDININAGG
SLDIQSTGPGIIQTPTDIEKESPANLEAAVMLDNNTVNREDKYILKLNLDAMSDVMVSGA
KTDRNIADLAFYGMGGTMQLANVGIYGASIQMGSSDQKMGLASLSITGLELDKGFKIKTM
GAGGRSGYKGKHRAAGGGRGPRGGKGGRHRAGNKGDPKKPHADCKECRGRVGGSIGLDVG
DERFSHLDFVLPGVFPLEWNRTYRSNMTAKDGQGELGPRWITAFTLVVLPLETGGYEYIS
EVGRAVSVIELEPGQEWYDRTEELIWRRPDVDTLEVSQKYQRTETFERSGDVFRLKTIAD
RAGNQAQLIYDAENGFLVRVETAIQTVHLDHDAHGRITTIWHEVTGDDGTPLRRTLARYQ
YDEAHDLVAAVDQYERTHTYAYQNHLITRYSDKTGRGINLEWDGDHPQAKCVREYRDDGS
NLLRFRWDESESKTYVTDALSATTVYTFDAHNYIIHIDFADGTRQSRIRDEFHNIVEVRY
PDDSFEKYEYDEFDNILKLTRADHTTVGWEYDQYSQITKIVDPGGNIWTRDYDQFGNMIR
ETDPKGHTSEFQYTAEGLLIQSVNPAGGVSTLSYNPAGLLIRYSDCSNKTRRWEYDLLGR
TVKQTDPCGNAESYEYNRYGFINEVRRPDGSVLTLDFDEEGRLLSFIDPIDNLTVYAYDG
AGRLARKTDPLKQDFHYNYDKKGRLASLQDENGAQFTFQFDPVDRLIRTVGFDGKVKKYN
YDKPTGLLFSMEDADRETHFEYDVMGQLLKRRAGHLVDSFEYDISNRIIRAHNEYCDQHF
EYDVLNNPIRETHIYNAFGQNREYVWENEFDELSNRLTTRRPSGEKVSWLRYGAGHVHGI
LLDDQEVLSFERDNSHRAVRKRQSNSLLAVTNYDVMGRVKEQKLNLAQGNRTNLRSRQYA
YGLDGSLVAIEDSRHGTTTYRYDALDRLVSATAFNETELFAFDPASNLVDRDKTERSKPA
NTFPKNVSKVLGNILKRCAGMHFEYDAQGNLIRKRKPDSLQEFEWDEFGRLRKTVNTDLN
SKHVSEAEYIYDTFDRRIGKVNQQETSGAAVTFYGWDGHHLAFEESTVGDAVDKTHYLYE
ENSFVPLIQYQYSADNTIAEGRNHLSVSHYQCDHIGTPQLLTDDNGHIVWEGRYSALGKQ
LDSIGGDAGVAGGQNNLCYQGQYYDRESGLHYNRFRYYDPDIGRFIQQDPIGLFGDSNFY
TYAPNTANWIDPFGLMKEILRSTWNSIRNNYYKGMGGEVNHVPAYASYKGLEGAPSRGRG
PAFWMEKADHRSMATTGGSRRARNARNTQRNFILNKQWDKAIATDIDDLNKKFPGKYDED
VMHMLDEHQRQGNITSEQNQELKDRLNDRPGVC
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtaccgtaaatgccaccacccccttgggcgataaactcaagttcaaatccctc
aaaggtcacgagcagctatctgacctgtttgaatggactgttgaatttgtgtccgacagc
cccggactggtgctggaagacctgctgggcaaaacgatatcactggaggtagaaaccagc
gccgcgccacgctatatgcatggcgtgatcactgcattcaagttagtgcatcgtgaaacg
caaacgcggcggtattatatttatgaggctacggttcgtccgtggctatggtattcgacc
caggtgaccgacaaccgcatcttccaggatcagacggcggtacagattattactcaggtt
ttgcaggcctacgattatccgatagagaatcgcctggtggggcaatatcgcaaatggggt
tacagcgttcagtttcaggaaagtgatttcaatttcatcagccggctgatggagcatgaa
ggcatttactactggtttcgacatgaaaaagaccagcacgtactggtattgatggacgat
gcgcactcacatgcacccttgccggtcatgcccgacatccccttttacccggacgacaca
cgttccgtgccgctggaagaatacattcgtgattggcagattgccggtgaactgacgccc
accacgtactccaccatggactacgacttccagaaaccgcaggcggagatgagcgcccga
cgctgggtgaaaaaccagaatacccaggggctggatctggactggtacgatccaatgggt
gggtatgttgattctgccgattcggaccattatgcccgcgtccatctggaatctatgcag
tgcctgcaggaacaggcatgggcagtgagcaatgtgcgcaatctggcgcccggctacacc
ttctccctgaaatattatccaaacagtgaagagaataagtcttatctgatcctgcgcgcc
gaatatgactttcgtgatccgtcctatgccagcgcaggcggcgttcaggaaaatgcgaca
tttgtgattcgctcacagcatataccggcatcggtgcagttcagggcaccgcgcagcacg
cccgcgccccggatgagtggtccgcaaaccgcgaccgtggtggggccggacggtcaggaa
atctggacagacaaatatggacgcatcaaagtccagttccactgggatcgtcagggtgcc
atggacgaaaacagttcatgctggctgcgggtctccagcccctgggcgggcggcggtttt
gggggcgtgcaaattccccgggtacgcgaagaagtggtagtggactttattaatggagac
gtggatcgacccattgccgtggggcgcgtatacaacgccagcaacatgccgccggtgtcg
ttgcccgagaacgcgactcaaagcggctttctgacgcgtaccaagaatggcaccccggag
aacgcgaataaaatgctgtttgaagacagccagggcaatgagttgctgtctatggttgcg
gaaaaagacatgaatacgcatgtcaaaaacaatcagcagcacgatgtagtgggtaacgcg
gtgtcatcgattggtggcttgcgttcgcacaccgctcacagtacgtccagcattacgatg
gcctcgggcgcggtcaagtcgtatcagtccaatcacaaccggactgtacaagcatcgctg
gacgatagtgtgggcggcaacctggaacagaccctgagcgacggcgtggacgaaaccatt
accggtgcgcacagccataccgttagcggcgccgcctcgcaccagttgctgggcttgcat
gtaaataccacgacgcaggacgtagaaacggtgaatggcaccgttactgaaaccgtcagt
gcagacgaaaccacaaatgtgacctcaagctccgagctggaagcggccgatatcacactt
gaaacgcccagcctgtacaaggaatcaaccaaacaggacattaatattaacgcagggggc
tcgctggatatccagtccaccggccccggtatcattcagacgcccacggacattgaaaaa
gaaagccccgcaaatctggaagcggcggtgatgctggacaataacaccgtcaatcgtgaa
gacaagtatattctgaagctcaatctggatgcgatgagcgatgtgatggtcagcggcgct
aaaacggacagaaatatcgccgacctggccttttatggtatgggcggcaccatgcaattg
gcgaatgtcgggatctatggcgccagcattcaaatgggttcaagcgaccagaaaatgggc
ctggccagcctgtccattaccggcctggaactggataagggttttaaaatcaagaccatg
ggcgcaggcggccggtctggatataaaggcaaacaccgcgccgcgggcggcgggagggga
ccgcgtggggggaaaggcgggagacatagggcggggaataagggagaccccaaaaaaccg
catgccgattgcaaggaatgtcgtgggcgtgttggcgggtccattggtctggatgtgggt
gatgagcggttcagtcatctggactttgttcttcctggtgtatttccgcttgaatggaat
cgcacctaccgttccaatatgactgcgaaagatggtcagggcgagctggggccgcgatgg
atcactgcctttacccttgtggttttgcctttggaaacaggtgggtatgagtatatttcg
gaagtcggccgcgcggtttctgtgattgaacttgaacctgggcaggaatggtacgacaga
accgaagaattgatctggcggcggccagatgttgacacgcttgaggtgagccagaaatac
caacgcaccgagacgtttgagcgtagcggcgatgtatttcgtctgaaaacgattgccgac
agggccggcaatcaggcacaactgatttatgacgcagagaacggctttcttgttcgtgtg
gaaaccgcgatccagacagtgcaccttgatcacgacgcacacggtcgaatcacaacaata
tggcacgaggtaaccggagatgatggaacgccgttacggcgtacacttgcccggtaccag
tacgacgaggcgcatgatcttgttgcagctgttgatcaatatgagcgcactcatacctac
gcttatcagaatcatctgatcactcgctatagcgataaaaccgggcgcggcatcaatctg
gaatgggacggcgatcacccgcaagctaaatgtgttcgcgagtacagagatgacggcagc
aacctgcttcgcttccgatgggacgagagcgaatcaaaaacctatgtgaccgatgcactg
agcgccactaccgtttatacctttgacgcccataactacatcattcatattgactttgct
gatggtacgcgtcagtccaggatacgagacgaatttcataatattgttgaagttcgttat
ccggacgactcattcgaaaaatatgaatatgacgaattcgataatatcctgaaactgacg
cgcgctgaccatactacggttggctgggaatatgatcaatacagccagattacgaaaata
gtagatcccggtggtaatatctggacgcgtgactacgaccagttcggcaatatgattcga
gagactgaccccaagggtcatacttccgaattccagtacacagccgaaggtctgttgatt
cagtcggtcaaccccgccggtggggtgagtactttgtcctacaatccggcgggtctgctc
attcggtactcggactgttcaaataaaacccggcgctgggaatatgatttgctgggacgc
acggtcaaacaaaccgatccttgcggcaatgcagaatcctatgaatacaaccgctacggc
tttatcaatgaagtgcggcgtccggacggaagtgtcctgacactggattttgatgaagag
ggtcggttattgtcgtttatcgatcccatagataatctgaccgtctatgcgtatgatggg
gccggccggctggccagaaaaacagatccgctcaagcaggattttcattacaactatgat
aaaaagggacgcctggccagcctgcaagatgaaaatggcgcacagtttacctttcagttt
gatccggtagaccggctgattcgtactgtcggattcgacggaaaggtaaaaaaatacaac
tatgataagcctactggcctgctcttttccatggaggatgcagaccgggaaacgcacttt
gaatatgacgtgatgggacaattgctcaaacgtcgtgccggccacctggtggacagcttt
gaatacgatatctccaatagaatcatcagggcacacaacgaatattgtgatcagcacttt
gaatatgacgtattgaacaatcccattcgggagacccatatatacaacgcgttcggacaa
aatcgcgaatatgtctgggaaaacgaatttgacgagctgtccaatcgacttacgacccgc
cgtcccagcggagaaaaagtcagttggctgcggtatggtgcagggcacgttcacggcata
ttgctggacgatcaggaagtgctgtcttttgaacgggacaacagtcatcgcgcagtacgc
aagcggcagtcaaattcacttcttgccgttacgaactatgatgttatgggcagggtgaaa
gaacaaaagctgaaccttgcacaaggcaaccgaacaaacctgcgttcgcgtcaatacgcc
tacggtctggatggttcgctggtcgctattgaggattccagacacggtacaacgacatac
cgctatgatgcgctggaccggctggtgtccgctaccgcttttaatgagactgagctcttt
gcatttgaccctgccagtaatttggtggatagggacaaaacggaacgttcaaaaccagcc
aatacctttcccaaaaacgtttcgaaggtgttagggaatattctgaaacgctgtgctggc
atgcattttgaatatgatgctcaaggcaacctgattcgcaagcgcaagcctgactcgctg
caggagttcgaatgggatgaatttggtcgtttaaggaaaacggtcaataccgatctgaac
agtaagcatgtctctgaggctgaatacatttacgatacctttgatcggcggataggaaag
gtaaatcagcaggagacatcgggcgcagcagtcacgttctatggctgggatggtcatcat
ctggcttttgaagaaagcacagtaggtgatgctgttgataaaacccactatctgtacgaa
gaaaatagttttgtacccctgattcagtatcagtacagtgccgacaatacgattgcagaa
ggccggaatcatttatcggtcagccattaccagtgcgaccacatcggtacgccgcaactg
ctcaccgatgacaatggacatattgtctgggaggggagatattcggcactcggcaaacag
ctggactcgatcggtggagacgctggggtagccggcgggcaaaataacctgtgctatcag
ggccaatattatgaccgggaatcagggctgcactacaatcggtttcggtattatgatccg
gatatcggccggttcattcagcaggatccgatagggttattcggggattcgaatttctat
acctatgcgccgaatactgcgaactggattgatcctttcggattgatgaaggagatttta
cgcagtacctggaattcgattcgcaataattattataaaggcatgggtggcgaggtcaat
cacgtgccggcttacgcttcatacaaggggctggaaggtgcgcctagcagaggtagaggt
cctgcattctggatggaaaaggctgatcaccggtcaatggctacgacggggggcagcagg
agagcaaggaatgctcgaaatacccagcgcaactttatattgaataaacagtgggacaag
gcaattgctacggatattgatgatttaaataaaaaatttccagggaaatatgacgaagac
gttatgcatatgctggacgagcatcaaaggcagggtaacataacgagtgaacaaaatcag
gaattgaaagatcgtttaaacgacaggccgggagtatgttga
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