Aurantimicrobium minutum: AUMI_11960
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Entry
AUMI_11960 CDS
T05175
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
amin
Aurantimicrobium minutum
Pathway
amin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUMI_11960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amin03021
]
AUMI_11960
03019 Messenger RNA biogenesis [BR:
amin03019
]
AUMI_11960
Transcription machinery [BR:
amin03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AUMI_11960
Messenger RNA biogenesis [BR:
amin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AUMI_11960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA_25
Spore_III_AA
NACHT
ResIII
PIP5K
ATPase_2
VWA_2
Vir1p
Motif
Other DBs
NCBI-ProteinID:
BAU98738
UniProt:
A0A173LV79
LinkDB
All DBs
Position
sequence1:197779..199557
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AA seq
592 aa
AA seq
DB search
MSENSFEETPAAEAAPRKRTSRRATVTAPVSSADAVSGAVSVSASQHVNSGDAGVPALAP
ALQASAEEAPRRGRGRPSKKAAEVAETSAPESDSPAEASEAGPRRGRGRGRNAEVTENTG
DAEQNSGSAEGPGDSDNADGERPNRNRNRNRNRRDRNDRVEGDNNRNNGPESEGEERNDR
YDRNGRNNRQRDRRRGGRMGDEVEPEILEDDVLIPIAGILDVLDNYAFVRTSGYLPGNND
VYVSLGQVKKYNLRKGDAIIGAIKQPREGEGFGRQKYNALVKIDSINGQTIEEAAARVDF
QSLTPLYPQERLRLETESAKITGRIIDLVSPIGKGQRGLIVAPPKAGKTIVMQQIANAIA
QNNPEVHLMVVLVDERPEEVTDMERSVKGEVIASTFDRPAEDHTMVAELAIERAKRLVEL
GQDVVVLLDSITRLGRAYNLAAPASGRILSGGVDAAALYPPKKFFGAARNIENGGSLTII
ASALVETGSKMDEVIFEEFKGTGNMELRLSRALADKRIFPAVDVNASGTRREEMLMGADE
VKVTWKLRRALAGLDQQQALESVVGKLKETATNVEFLMLMQKSNAGSASKED
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagaactcattcgaagaaacccccgcagcagaagctgcaccccgcaagcgcacc
tcacgccgcgcaaccgtaactgcccccgtgtcatctgctgatgcagtttcaggcgctgta
tctgtcagtgcttcacagcacgtcaactcgggcgacgctggtgttcctgcgcttgcccct
gcgttgcaggcaagcgctgaggaagcaccacgtcgcggtcgcggacgaccctccaagaag
gcagccgaggtagctgaaacgtcagcacctgaatcagattcacccgcagaagccagcgag
gctggcccacgtcgtggacgtggccgtggacgcaacgctgaagtaaccgagaacacaggt
gatgccgagcagaactctggttccgctgagggacctggcgacagcgacaacgctgatggc
gagcgacctaaccgtaaccgcaaccgtaaccgcaaccgtcgcgatcgtaacgaccgtgtt
gagggagataataaccgcaacaatggccccgagtctgagggcgaagaacgtaacgatcgt
tacgaccgcaacggtcgtaacaaccgtcagcgtgaccgccgccgcggtggccgcatgggc
gacgaggtagaaccagaaatcctcgaagacgatgtcttgattcctattgcaggcattttg
gacgtactggacaactacgcattcgtgcgcacgtccggttacctccccggcaacaacgac
gtctatgtttctcttggacaggtcaagaagtacaacctgcgcaagggtgacgccattatt
ggtgcaatcaagcagcctcgcgaaggtgaaggctttgggcgtcagaagtacaacgcactt
gtcaagattgattccatcaatggccagaccattgaagaagcagccgctcgcgttgacttc
cagtccttgactcctctttacccacaggagcgcctgcgtctggagaccgaatctgccaag
atcactggccgcatcatcgacttggtgtctcccattggtaagggacaacgtggtctgatt
gttgccccgcctaaggcgggcaagaccattgtgatgcaacagattgctaacgcaatcgct
cagaacaaccctgaggttcacctcatggttgttcttgtcgacgagcgtccagaagaagta
accgacatggaacgcagcgtcaagggtgaagtcattgcctcaacctttgaccgtccggct
gaagaccacaccatggtggcagagctcgctatcgagcgcgcgaagcgcctcgtcgagctc
ggccaggatgttgtagttctgcttgactcgattacccgcctgggacgcgcctacaacctg
gcggctcctgcgtctggtcgtattctctcaggtggtgttgatgcagctgcgttataccca
cccaagaagttcttcggtgcagcacgcaacattgaaaacggtggatccttgaccatcatt
gcttcagcactagtcgaaaccggttcaaagatggacgaagtcatcttcgaagagttcaag
ggcaccggcaacatggagctgcgtctctcacgtgcacttgcagacaagcgcattttccca
gcagttgatgtcaacgcttctggaacccgccgtgaagaaatgctcatgggtgctgacgag
gtcaaggtcacctggaagcttcgccgcgcccttgctggtcttgaccagcagcaggcgctt
gaaagcgttgtgggtaagctcaaggaaacagcaaccaacgttgagttcttgatgctgatg
cagaagtccaacgcaggttctgcttccaaggaggactaa
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