Aurantimicrobium minutum: AUMI_12880
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Entry
AUMI_12880 CDS
T05175
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
amin
Aurantimicrobium minutum
Pathway
amin03420
Nucleotide excision repair
amin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AUMI_12880
03430 Mismatch repair
AUMI_12880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amin03400
]
AUMI_12880
Enzymes [BR:
amin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AUMI_12880
DNA repair and recombination proteins [BR:
amin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AUMI_12880
MMR (mismatch excision repair)
Other MMR factors
AUMI_12880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAU98830
UniProt:
A0A173LVD9
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All DBs
Position
sequence1:297750..300956
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AA seq
1068 aa
AA seq
DB search
MTEMRISALELAQKLGQPAPTTEQQAIIEAPLEPALVLAGAGSGKTETMANRVVWLVANG
KVAVHEILGMTFTRKAAGELGERIRARIAALVEKKIVPLEIDDLEQATVTTYNSFANRIY
SQYAVLIGRDPDATVLGEAAAWQLARSIAREGTGENLADLDKSLDTLTEAILRLSRAIAD
NVADVHEIARYARALDAHTVDMPIDPGSRKSAPVDAWLKVREVGLTLPVLTDLAAEFAAA
KRRQGLIEFSDQVALALEICQRFDAVVADFRSQFKVVLLDEYQDTSVVQTQLLSLLFANT
PVMAVGDPHQSIYGWRGASADNIEQFGAAFATSSDAVATYSLSTSWRNPVDVLVAANVLV
RPLNEKTRIPQQQLQARPNADQGELTLSVSETILDEAKEVAAWLASRVTAETSAALLCRS
LQGIDPFKKALEAAGVPYHVVGLGGLLDEPVIVDVVCTLRVLHDATADSELVRLLTGARW
ALAPKDIVGLSDIAKWMSARDHRQQKLSPEIREALRASVVSEDGSSLVDALDFVATAPEG
HIALEFLSPEARTRLKHAGTQIARLRRRAGADLRELVTIVQQELLLDIEAVANESASTAL
ASLEAFMEPLSAYVDGEDRATLGGFLSWLTEAERRERLSPQSAPAEPGTVQIMTIHGAKG
LEWDVVAIPRMVKDELPGNRTRAEHWLGFGRLPFPFRGDAAHLPVFDWQAASTQVELGER
FEQFQEAVRQRYDDEQRRLAYVALTRAKHKLLLSASFWASQVSARPPGIFLQELAAAGLF
AQELPEAPQNESNPLEGLEETINWPLDPLGSRRAIVQRAAEAVHAASVELATPWDSDIEL
LLAEQQNRQSADSAVVIPERIPASRFKDFIENPEAVAKSLRRPLPERPYRATSLGTLFHS
WVEQRSKTNSLPDFVDATAFELDGVDELSRVSQDEHTLAQLKRIFEQSEWAQRKPVAVEL
EVNVPFGNSIIICKIDAIYEVEGSQGTRFEIVDWKTGKAPKDAADLELKQFQLALYRMAY
SRWSGVAPENIDAAFYFVAEDTVVRPERIYSESELEERWSSVTGSMPR
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgacagagatgagaatcagtgcactggaactagcccagaaactgggtcagcccgcacct
accacggagcagcaggccattattgaggcaccgttggagccagcactggtccttgctggt
gcaggcagtggcaagacggaaacgatggctaaccgtgtggtgtggttggtcgctaatggc
aaggttgcagtccacgaaattttgggtatgacctttacccgtaaagctgcaggtgaactt
ggtgagcgtatacgagcgcgcattgccgccctggtggaaaagaagattgtgccattggag
attgacgatctcgaacaagccacggttacgacgtataactcttttgctaaccgcatttat
tcgcagtacgccgtcctgatcggccgggacccagatgctacggtgctcggtgaagctgcc
gcttggcaactggcgcgctcgatcgcgcgggagggaaccggagagaatctcgcagattta
gacaagagtctggatactctcaccgaggccattttgcgactgtcacgagccattgccgac
aatgtggccgatgttcacgagattgcacgttacgcacgtgctttagatgcgcacaccgta
gacatgcccatagatccaggttctcgcaagagcgctccggtggacgcttggctgaaggtg
cgcgaagttggtctcactcttccggttctcactgatttagccgcggaatttgctgctgct
aagcgacgccaaggattgatcgagttcagcgatcaggttgcgttggccttagaaatctgt
caacggtttgacgccgtcgtggcagatttccgcagccagttcaaagtcgtgctactggat
gagtatcaggacacttcggttgttcagacacagttactgagcctgttatttgccaatacc
cccgtgatggcggtgggagatcctcaccagtcaatttatggttggcgtggtgcttcagca
gacaatattgaacagttcggtgccgcctttgccactagttctgatgcggttgccacctac
tcgctgtcaaccagttggcgtaatcctgttgacgtactcgttgcagctaatgtgctggtg
cgacctctcaacgagaaaacccgaattccgcagcagcaacttcaagcacgccccaatgca
gaccagggagagctcaccctgagtgtgagcgaaacaattcttgatgaagcaaaagaggtg
gcagcgtggttggcttcgagagtgacggcagaaacgtctgcagcgctgttgtgtcgatct
ttgcagggtattgaccccttcaagaaagcgttagaagcggcaggtgttccgtatcacgtc
gtagggttgggcggccttcttgacgaaccggtcattgttgatgtggtgtgcacattacgt
gtgcttcacgatgccactgcagactctgaattagtgcgtttgctcaccggtgcgcggtgg
gcacttgcacccaaagacattgtgggcctgagcgacattgcaaagtggatgagcgcacgt
gatcaccgtcaacaaaaactctccccagaaatccgtgaagctttgcgggcctccgttgtg
tccgaggatgggtcatcactggttgatgcccttgattttgttgccacggcacctgaagga
catattgcactggaattcctcagcccagaagcacgaactcgattgaagcacgcaggaacg
cagattgctcgcctacgtcgccgggcaggtgcagatttacgcgaactcgtcaccatcgtt
cagcaggaactactcctcgatatagaggcggtggccaacgaatctgcctcgactgcgctg
gcgagcttagaagcattcatggagccgctttctgcttatgtggatggcgaagatcgagca
accttgggtggattcctcagctggttgaccgaggcagagcgtcgtgaacgactcagccca
caatctgcacctgcggaaccgggaaccgtccaaatcatgaccatccacggtgcaaaaggt
ttggaatgggatgtagttgccattcctcgtatggtcaaagatgaactccccggcaataga
acacgtgctgagcattggcttggttttgggcgcttacccttccctttccgcggcgatgcc
gcccacttgcctgtttttgactggcaagctgcctcaacccaagttgaactgggggaacgt
tttgaacaattccaagaagctgttcgccagcgctatgacgatgaacaacgcaggcttgcc
tatgttgccctcacgcgtgccaagcacaaactcttactctcagcatccttttgggcatct
caagtaagtgcacgcccaccgggtatttttcttcaagaacttgccgctgctggtttgttt
gcccaggaacttccagaagccccgcagaatgaatccaatcctttagaaggccttgaagag
acgattaattggccgctggatccgttgggaagtcgacgcgccatcgttcaacgcgctgct
gaggctgtgcacgcggcgagtgttgaacttgcaacgccttgggattcggatattgagtta
ctccttgcagaacagcaaaaccgtcaatctgctgattctgcagtagtgatccccgaacgc
attcctgcatcgcggtttaaggacttcatagaaaatcctgaagctgtagctaaatcttta
cgcaggcctttgcctgaacgcccctaccgggcaacaagcttgggaacgctctttcactcg
tgggtcgaacaacgttcgaagacgaattcgctaccggattttgttgatgcaacagctttt
gaacttgatggtgttgatgaactttcacgtgtttcgcaagatgagcacaccttggcccag
ctgaagcgtatttttgaacaatcagaatgggcccaacgcaaacctgttgccgtggaatta
gaggtcaacgtcccctttggaaacagcatcatcatttgcaagattgatgccatttatgaa
gtcgaaggctctcagggaacccgttttgagattgtggactggaaaaccggtaaagcaccc
aaggatgccgccgacctggaactcaagcagttccagttagccctctatcgcatggcttat
tctcgctggtcgggtgtggccccagaaaatattgatgcagccttttacttcgttgccgaa
gacaccgtggtcaggcctgaacggatttactctgagagtgaactggaagaacgctggtcg
tcggtgacaggttccatgccgcgatag
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