Aurantimicrobium minutum: AUMI_16480
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Entry
AUMI_16480 CDS
T05175
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amin
Aurantimicrobium minutum
Pathway
amin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUMI_16480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amin03019
]
AUMI_16480
03009 Ribosome biogenesis [BR:
amin03009
]
AUMI_16480
Enzymes [BR:
amin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AUMI_16480
Messenger RNA biogenesis [BR:
amin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AUMI_16480
Ribosome biogenesis [BR:
amin03009
]
Prokaryotic type
rRNA processing factors
AUMI_16480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
KfrA_N
YqaH
Motif
Other DBs
NCBI-ProteinID:
BAU99190
UniProt:
A0A173LWC2
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All DBs
Position
sequence1:complement(680517..682895)
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AA seq
792 aa
AA seq
DB search
MGSTPLMVNNTENDENVTLEVVSEVLAEAVEAENLIISEAVEVAESIVEQAEDTAAEIVA
QAQINAAEVEIATDVIAEAIMETAVEVATPTPIEYPTFVAQDVTDIFFFAPNLPGSENRI
PSRDGRERFEDRRNRQGRNERGAFGQNQDNDAEEGSSTLRRRARRRQGEDRVGQDDPANT
IVRIRTPRAPEVITEPQRIKGSTRLEAKKQRRRDGRDAGRRRTVVTESEFLARREAVDRS
MIVREREDRVQIGVLEDNVLVEHYVARASEASLIGNVYLGKVQNVLPSMEAAFVDIGRGR
NAVLYSGEVDWDSVETGNQPRKIENALKPGDKVLVQVTKDPVGQKGARLTSQVSLPGRYL
VYVPNGSMNGISRKLPDTERTRLKRILKEVLPENVGVIVRTAAEGATEEQLTVDVQRLTQ
QWEEISRKAETDNAPAILHSESDLLIKIVRDVFNEDFQRMIIQGDMAKATIESYLNQVAP
ELLDRISAYEGDRDAFDEYRITEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFV
GSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVHRRLIECLSR
DRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSEACQVCAGRGVIVHHEPVTRPGNNGESN
AAEPRKRSKGRNSDKPAAAAVVAHPIPEGAKNALAQIAASTLGHNTEDHVDEDTTTEVVE
ILDIPVVKSDRGRKSRVSAEKVENILENVLDALPEPSAAGHGRGRSRRVSTATISTTEHL
SPAVDDIEAGGE
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtacaccactgatggtgaataacaccgaaaacgacgagaacgtgaccctagag
gttgtctctgaggttctcgctgaagctgttgaagcggaaaacctcatcatttctgaagcc
gttgaggttgctgaatcgatagttgagcaggccgaagatacagcggctgaaattgtcgct
caggcacaaatcaacgcagctgaagttgagattgccactgacgtgattgcagaagcaatt
atggagactgcggtggaagtagcaaccccgacaccaatcgaataccccacattcgttgct
caggacgtcacagatattttcttctttgcgccgaatcttccaggctcagaaaaccgtatt
cccagccgtgacggtcgtgagcgtttcgaggatcgacgcaaccgtcaaggacgcaacgag
cgcggtgctttcggtcaaaaccaggacaacgatgccgaagagggaagttcaacactgcgt
cgacgtgcgcgtcgacgtcagggtgaagatcgtgttggacaggatgacccggctaacacg
attgttcgcattcgcactccgcgtgcacctgaggtcattactgaaccacaacgcattaag
ggttcaacacgtttagaggcgaagaagcagcgccgccgtgatggccgtgatgctgggcgt
cgccgtacggtagtcaccgagagtgaattccttgcccgccgtgaggcagtagaccgctcc
atgattgttcgcgagcgcgaagatcgcgtacagataggcgtgcttgaagacaatgttctt
gttgagcactacgttgctcgcgcctctgaggcaagcctgattggcaatgtctacctcggt
aaagtgcaaaatgttcttccgtcgatggaagcagcattcgttgatatcggccgtggacgt
aacgctgttctttactcaggtgaagttgactgggactcggtagaaacaggcaaccaaccg
cgcaagattgagaatgcactcaagccaggagacaaggtccttgttcaagtaaccaaggat
ccagtcggtcaaaagggtgcacgcctgacctctcaggtttctctccctggtcgttacctt
gtgtacgttcctaacggttcaatgaacggcatcagtcgcaaacttcctgacactgaacgc
acacgcctcaagcgcatcctcaaagaggttcttcctgaaaatgtcggtgtcattgttcgt
accgcagctgaaggtgcaaccgaagagcaactcaccgttgacgtgcagcggttgacccag
cagtgggaagagatttctcgtaaggcagaaaccgacaatgctccagctattttgcacagt
gaatcagaccttctgatcaaaattgtgcgtgacgtcttcaatgaagacttccagcgcatg
attattcaaggagatatggctaaggccactattgagagctatctcaaccaggtagcacct
gagcttctcgatcgtatttcagcgtatgaaggcgatcgtgatgcattcgatgaatatcgc
atcactgagcaaattgagaaggcactcgaccgtaaagtttggcttccttcaggcggttca
ctagttattgaccgaactgaagcaatgacggtcgtcgacgtcaacacgggaaagtttgtt
ggttctggcggaaacctggaagaaaccgtcacgaagaacaacctcgaggctgctgaagaa
atagttcgccaacttcgcttgcgtgatatcggcggaattattgttgtcgactttattgac
atggttttggaatcaaatagagaccttgtccaccgtcgcttgattgaatgtctgtcgcga
gaccgcacaaagcaccaggttgctgaagtgacctcactcggtctcgtacaaatgacccgt
aaaaagcttggtttaggtctgcttgaaacattctcagaagcatgtcaggtatgtgctggt
cgaggtgtcattgttcaccacgaacctgttacacgtccgggaaacaacggtgaatcaaac
gctgctgaacctcgcaagcgtagcaagggtcgtaacagcgacaagcctgcagctgcagct
gttgtggcacaccccattcccgaaggtgccaagaatgcactggctcaaattgcagccagt
actcttggccacaacactgaagaccatgttgacgaggacacaacaactgaggttgtcgaa
attctcgacattcctgttgtgaaatctgatcgtggccgtaagtcccgagtttctgctgag
aaggttgaaaacatcctcgaaaacgtgcttgatgccttgccagaacccagtgctgctggt
catggacgaggtcgttcacgtcgagtttccacagcaacaatctcaacgacagagcatcta
tccccggctgtcgacgacattgaggctggaggggagtaa
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