Aminobacter sp. NyZ550: N7E70_018090
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Entry
N7E70_018090 CDS
T11159
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amio Aminobacter sp. NyZ550
Pathway
amio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N7E70_018090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amio03400
]
N7E70_018090 (mfd)
Enzymes [BR:
amio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N7E70_018090 (mfd)
DNA repair and recombination proteins [BR:
amio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N7E70_018090 (mfd)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WAX93589
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Position
complement(3644020..3647520)
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AA seq
1166 aa
AA seq
DB search
MSLTKAIGLPKGRAGQFIVDGVADGYEAFALAIAAAETAPDKPLLFVARDGQRLPQIVEA
LAFVAPDLPVLELPAWDCLPYDRVSPGSDTAARRLDALAAIIALRKEPHRAIVLTTANAL
LQRMPPSAALEAQEFRAKPGNQVEMNQLVARLERAGFERVPTVRGVGEFAVRGGILDLYA
PGAADALRLDFFGDTLETIRAFDVASQRTTGSRNQVVLQAMSEVALTPETISKFRRSYIE
AFGAPSRDDALYAAVSEGRRFAGMEHWLPFYYSHLETIFDYLPDAPVVFDHLAREALGER
HALILDHYEARRKQGEGKGLKDAVPYKPVAPDQMYLSPEEVFTALADQVNAELTPFDTPF
SSGRKVLHAGSHAGRSFAEERADPNANVFDVVARHIADQRAAKRRVVVAGWTEGSLDRLT
QILDEHELGNLKRVANMAEVEALKPGEAGLAVLPIEAGFESGDLVVVAEQDILGDRLIRR
SKRRKRAADFIAEAASLSSGDIVVHADHGIGRFVGLKTIEAAGAPHDCLEIHYASDGRLF
LPVENIELLSRYGSDSAEAQLDKLGGGAWQSRKAKLKRRLLEMAGQLIKLAAERHMREAP
AMNPPDGVYGEFAARFPYEETDDQQSAIDSVMEDLGAGKPMDRLICGDVGFGKTEVALRA
AFIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFAGLPVKVRQASRLVGSKELAETKQGISD
GTVDIVVGTHALLGSSIQFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPR
TLQLALTGVRELSLIATPPVDRMAVRSFISPFDPLVIRETLLRERYRGGHSFYVVPRIAD
LAEIHQFLQESVPELKVAVAHGQMPPGELDDIMNAFYDGQYDVLLSTTIVESGLDIPTAN
TLIVHRADMFGLAQLYQLRGRVGRSKVRAYALFTLPANRTLTATADRRLKVLQSLDTLGA
GFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELRGSGEAIDTGWSPLI
AVGTAVMIPEGYVPDLQLRLALYRRLGDLENTEEIDGFGAELIDRFGPLPEEVKHLLKIV
FIKALCRKANVEKLDAGPKGVVVQFRKKEFANPAGLVRYIAEQGTLAKIRPDHSVVFARD
WPNPEKRLAGSAVIMTQLAKLAEQAA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaccaaagcaatcggcctgcccaagggtcgcgccggacagttcatcgtcgac
ggcgtcgccgacggctatgaggccttcgcgctcgccatcgccgccgccgagacggcgcct
gacaagccgctgctgtttgtcgcgcgcgacggacagcggctgccgcagatcgtcgaagcg
ctggctttcgtcgcgcccgacctgccggtgctcgaactgccggcctgggactgcctgccc
tacgaccgcgtgtcgccggggtcggatacggcagcgcgccggctcgatgcgctggcggcg
ataatcgcattgaggaaagagccgcatcgggcgatcgtgctgacgacggccaatgcgctt
ctgcagcgcatgccgccgtcggctgcgctcgaagcgcaggaattccgcgccaagccgggc
aaccaggtcgagatgaaccaactggtggcgcggctcgaacgggctggcttcgagcgcgtg
ccgacggtgcgcggcgtcggtgaattcgccgtgcgtggcggcatcctcgacctatatgcg
ccgggtgccgccgatgcgctgcgcctcgacttcttcggtgacacgctggagacgatccgt
gccttcgacgtcgccagccagcgcacgacgggcagccgcaatcaggtggtactgcaggcg
atgagcgaggtggcgctgacgccggagacgatcagcaagttccgccgcagttacatcgaa
gcctttggcgcgccgtcgcgcgacgatgctctgtacgccgcggtcagcgaaggcaggcgc
tttgccggcatggagcactggctgccgttctattattcgcatctcgaaacgatctttgac
tacctgcccgacgcgcctgtggtgttcgaccatctggcgcgcgaggctttgggcgagcgc
catgcgctgatccttgatcactacgaggcccgccgcaagcagggcgagggcaaggggctc
aaagatgccgtgccctacaagcctgtggcgccagatcagatgtatctgtcgcccgaagag
gtgttcaccgcgctcgccgaccaggtcaatgctgagcttacgccgttcgacacgccgttt
tcgagcggacgcaaggtgctgcatgccggttcgcatgccggccgcagctttgccgaggag
cgcgccgacccgaacgccaacgtcttcgacgtggtggcccggcacatcgccgaccagcgg
gcggccaagcgccgcgtcgttgtcgccggctggaccgaaggctcgctcgaccggctgacg
cagatcctcgacgagcacgagctcggcaacctcaagcgtgtggcgaacatggccgaggtc
gaggcgctgaagccgggcgaagcgggcctcgcggtgctgccgatcgaggccggcttcgag
tcaggtgacctcgtcgtcgttgccgagcaagacattctcggcgaccggctgatccggcgc
tcgaagaggcgcaagcgcgctgccgacttcatcgccgaggcagcgtcgctgtcgtcgggc
gacatcgtcgtccacgccgaccacggcatcggccgctttgtcggcctcaagacaatcgag
gcggccggtgcgccacatgactgcctcgaaatccactacgcctcggacggccggctgttc
ctgccggtcgaaaacatcgagcttctgtcgcgctatggctcggactcagccgaggcccag
ctcgacaagctcggcggcggcgcctggcagtcgcgcaaggccaagctcaagcggcgcctg
ctggagatggccgggcaactgatcaagcttgccgccgaacggcatatgcgcgaagcaccc
gcgatgaacccgcctgatggcgtctatggcgaattcgcggcgcggttcccctatgaggag
accgacgaccagcagagcgccatcgattcagtgatggaggacctgggtgccggcaagccg
atggaccgcctgatctgcggcgacgtcggctttggaaaaaccgaggttgccctccgcgcg
gcctttattgccgcgatggaaggtttccaggtggcggtcgtggtgccgacgaccttgttg
tcgcgccaacatttcaagaccttctcgcagcgtttcgccggcctgccggtcaaggtgcgg
caggcctccaggctcgtcggcagcaaggaacttgccgagaccaagcaaggcatatcagac
ggtactgtcgacatcgtcgtcggcacacatgcactgctcggctcgtcgatacagttcaag
aacctcggcctgctgatcatcgacgaggagcagcatttcggcgtcaagcacaaggagcgg
ctcaaggagctgaagagcgacgtgcacgtgctgacgttgtcggcgacgccgatcccgcgc
acgctgcagctggcgctgaccggtgtgcgcgagttgtcgctgatcgccacgccgccggtt
gaccgcatggcggtgcgcagtttcatctcgcccttcgacccattggtcatccgcgagacg
ctgctgcgcgagcgctatcgcggcggccacagcttctatgtcgtgccgcgcatcgccgat
ctcgccgaaattcatcagttcctgcaggaatcggtgcctgaattgaaggtggcggtggcg
catggccagatgccgccaggcgagctcgacgacatcatgaacgccttctatgacggccag
tacgacgtgctgctgtcgacgaccatcgtcgaatcgggcctagacattccgaccgcaaac
acgctgatcgtgcaccgcgccgacatgttcggcttggcgcagctctatcagctgcgtggg
cgcgtcgggcgctctaaggtgcgcgcctatgcgttgttcacgctgcccgccaaccggacg
ctgactgccaccgccgaccgcaggctcaaggtgctgcagtcgctcgatactctgggcgcc
ggcttccagctcgccagccacgacctcgacatccgtggcgccggcaacctcctcggcgag
gagcagtcgggccacatcaaggaagtcggcttcgagctctaccagcagatgctggaagag
gcagtggccgagctgcgcggcagcggcgaggcgatcgacaccggctggtcgccgctgatc
gctgtcggcacggctgtcatgatcccggaaggctatgtgcccgacctgcagctcagactg
gcgctctaccgtcgacttggcgatctcgaaaacaccgaggagatcgacggttttggcgcc
gagctcatcgaccgcttcgggccgttgccggaggaggtcaagcacctgctcaagatcgtc
ttcatcaaggctttgtgccgcaaggccaatgtcgaaaagctggatgccgggccgaagggc
gtggtggtgcagttccgcaagaaggagtttgccaacccggcgggtctggtgcggtacatc
gccgagcagggtacgctggccaagatcaggccggatcactcggtggtgttcgcccgcgac
tggccgaaccctgaaaagcgcctggccggctcggccgtcatcatgacgcaactggcgaag
ttggccgaacaggcggcttga
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