KEGG   Aminobacter sp. NyZ550: N7E70_018635
Entry
N7E70_018635      CDS       T11159                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
amio  Aminobacter sp. NyZ550
Pathway
amio02024  Quorum sensing
amio03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amio00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    N7E70_018635 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    N7E70_018635 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amio03019]
    N7E70_018635 (hfq)
   03036 Chromosome and associated proteins [BR:amio03036]
    N7E70_018635 (hfq)
Messenger RNA biogenesis [BR:amio03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     N7E70_018635 (hfq)
Chromosome and associated proteins [BR:amio03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    N7E70_018635 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: WAX93690
LinkDB
Position
complement(3748932..3749177)
AA seq 81 aa
MAERSQNLQDLFLNSVRKSKNPLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHA
ISTIMPSQPVQMFDGEESQGG
NT seq 246 nt   +upstreamnt  +downstreamnt
atggcggaacgatcgcagaatcttcaggatcttttcctgaattcagttcgcaagagcaaa
aacccactcaccattttcctgattaacggcgtgaagttgaccggagtagtgacctccttc
gacaatttctgtgttttgttgcgccgtgacgggcactcgcagctcgtctacaagcatgcc
atctccacgatcatgccgagccagccggttcagatgttcgatggcgaggaaagccagggc
ggctga

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