Anarhichas minor (spotted wolffish): 142946614
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Entry
142946614 CDS
T11660
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
amir Anarhichas minor (spotted wolffish)
Pathway
amir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142946614 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amir03019
]
142946614 (mtrex)
03041 Spliceosome [BR:
amir03041
]
142946614 (mtrex)
03009 Ribosome biogenesis [BR:
amir03009
]
142946614 (mtrex)
03016 Transfer RNA biogenesis [BR:
amir03016
]
142946614 (mtrex)
Enzymes [BR:
amir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142946614 (mtrex)
Messenger RNA biogenesis [BR:
amir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
142946614 (mtrex)
Spliceosome [BR:
amir03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
142946614 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
142946614 (mtrex)
Ribosome biogenesis [BR:
amir03009
]
Eukaryotic type
Pre-60S particles
Helicases
142946614 (mtrex)
Transfer RNA biogenesis [BR:
amir03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
142946614 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
142946614
NCBI-ProteinID:
XP_075944165
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTTASKNIPASLTPEIGKVIHNNGTDKDAAPSAAVKREADSDG
GEEMVFGKKPRHETGSELNLAEVMPQVKVEQVETVEGCSHEVALPASDEYKPLKPRVGKA
AKEYPFVLDPFQREAILCLDNNESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWITHLHKQPCHVIYTDFR
PTPLQHYLFPAGGDGLHLVVDENGDFRDDNFNTAMQVLRDAGDSGGSGGGKWDPRGRKGG
TRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNREDEKRLVEEVFNNA
VDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKMKK
YEEQYHSIEIPNEEGVVTYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKNEDA
DFGWGVVVNFSKKTNVKTSTDSEPLYVVEVLVHCSKDCVKDAATEAAKPAAPGETGEMQV
VPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIKDP
ALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVLQM
DKLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTVEQATAL
LSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLMD
VVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcttttggagacggcttgttcagcgtgtttgacgatgaacaacaaaccacc
gcaagtaaaaatatccccgcttccctgacaccagaaattgggaaagttatccataataat
ggaaccgacaaggatgctgctccgtctgccgcggtcaagagggaggctgacagtgacggt
ggagaggagatggtgtttgggaagaaaccccgacacgagacaggttctgaactaaatctt
gcagaggttatgccccaagtgaaggtggagcaagttgaaacggtggaaggatgctcacat
gaggtcgcactgcctgccagtgatgagtacaaaccactgaaaccgagagtggggaaagca
gccaaggagtacccttttgttcttgacccgttccagcgtgaagccatcttatgtctcgac
aacaacgagtcggtgcttgtgtccgctcacacctctgctggcaagactgtctgcgctgaa
tacgccattgcactggccctcagagagaaacagagagtgatcttcaccagccccatcaaa
gccctctccaaccagaagtacagagagatgtacgaagagttccaggatgtgggactgatg
actggcgacgtcaccatcaaccccactgcctcctgccttgtcatgaccacagagatcctg
aggagcatgctgtaccgaggctctgagatcatgagggaggtggcgtgggtcgtctttgac
gagatccattacatgagagatgcagagcgcggtgtggtttgggaggagaccatcattctt
cttcctgacaacgtgcattacgtcttcctgtcagccaccatccccaacgcccggcagttt
gctgagtggattacccacctacataaacagccatgccatgtaatctacacagacttccgt
cccactccactgcaacactacctcttcccagcaggaggcgatggactccacctggttgtt
gatgagaatggagacttcagagatgacaatttcaacacagccatgcaggtgctgagagat
gcaggggattctgggggcagcggagggggcaagtgggacccgagagggcggaaaggaggc
actagagggccgtccagcgtgttcaagatagtaaagatgatcatggagagaaacttccag
cccgtcatcattttcagcttcagcaagaaggaatgtgaggcctacgctctgcaggtggcc
aagctggactttaacagagaggacgagaagcgtctggtggaggaagttttcaacaacgca
gtggactgtctttctgacgaagacaagaaactccctcaggtggagcatgtgctgccgctg
ttgaagagggggatcggaatccatcatggaggcctgctgcccatccttaaagagaccata
gagatccttttctctgaaggcctgataaaggccctgtttgcgacagagacgttcgccatg
ggcatcaacatgccggctcgcaccgtgctcttcaccagcgcacgcaagtttgacggcaag
aatcaccgttttattacatcaggtgagtacatccagatgtccgggcgagccggtaggaga
ggaatggacgacaggggaattgttattttcatggtggacgagaagatgagtccagctgtg
ggcaaacagctgctcaagggctcagcagaccctttgaacagcgccttccacctgacctac
aacatggtgctgaacctgctgcgtgtggaggagatcaacccggagtacatgctggagaag
tccttctaccagttccaacactacagggctttgcctggtgttgtggagaaaatgaagaag
tatgaggagcagtaccacagcattgagatccccaatgaagagggcgtggtcacttacttt
aaaatccgacagcagctggccaagctgggtaaagagatacaagagttcacccacaaaccc
aaatactgcctgcccttcttgcagcctgggcggcttgtcaaggtaaaaaatgaagacgca
gactttggctggggagttgttgttaactttagcaagaagacgaatgtgaagaccagtaca
gactcggagccgctgtacgtggtggaggttttggtccactgtagtaaagactgtgtaaaa
gatgctgcgactgaggctgctaaacctgctgctccaggggagaccggagagatgcaggtg
gtcccagtgatgcttcatctcctgacttccattagctcagttcgcctttacatccccaaa
gacctgaggccctttgacaaccgacagctcatgctcaagtctattcaggaggtgcagaaa
cgtttcccagatggtgttcctctgctggaccccatagacgacatgggcatcaaagatcct
gcactgaagaaagttattcagaaagtggaggcctttgagcaccgcatgtactcccacccc
ctgcacagcgaccccaacctggagtctgtgtattccctctgtgagaagaaagctctgatt
gcagcagacgtccgaacggccaagcgagagctgaagaaagctcggaccgtcctgcagatg
gacaagctgaagtgcaggaagagagttctgcgacgcctcggcttcgccagcccgtccgat
gtcatcgagatgaaaggaagggtcgcctgtgaaattagcagtgctgacgagctcctgctg
acggagatggtgttcaacggtctctttaacgatctgacggtggaacaagccaccgccctg
ctgtcgtgctttgtcttccaggagaatgccagtgagatgccaaaactgaccgaacaacta
gcagctcccttgagacagatgcaggagtgtgcgaagcgcatagccaaagtttctgcagac
gccaagctggaggtggacgaggagacttatctgaaccagttcaagcctcacctcatggat
gtggtgttcgcctgggctaacggcgccacgtttgctcaaatctgcaagatgaccgacgtc
tttgaagggagtatcatccgttgcatgcgccgcctggaagaagtcctgagacaaatgtgc
tctgcagccaaagccatcggcaacactgagctggagaacaagtttgctgaaggaataacg
aagatcaagagagacatcgtatttgctgccagtctctacctttaa
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