Anarhichas minor (spotted wolffish): 142951356
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Entry
142951356 CDS
T11660
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b isoform X1
KO
K06236
collagen type I alpha
Organism
amir Anarhichas minor (spotted wolffish)
Pathway
amir04510
Focal adhesion
amir04512
ECM-receptor interaction
amir04518
Integrin signaling
amir04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amir00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
142951356 (col1a1b)
04518 Integrin signaling
142951356 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
142951356 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
142951356 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amir00536
]
142951356 (col1a1b)
Glycosaminoglycan binding proteins [BR:
amir00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
142951356 (col1a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
142951356
NCBI-ProteinID:
XP_075948971
LinkDB
All DBs
Position
Unknown
AA seq
1454 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDSTFGSCTLEGQLYNDKDVWKPEPCQICICDSGT
VMCDEVICEDTSDCADPIIPDGECCPICPDSDGPQVPGEFEPTNGETGETGPKGDKGPAG
PPGNDGMDGQPGFPGPPGPPGPPGLGGNFSPQMSYVDHSKSGGGQPQPGPMGPMGSRGAP
GQAGSSGPQGFNGPPGEPGEPGASGPMGPRGSAGPLGKNGDDGEPGKAGRPGERGAAGPQ
GARGFPGTPGLPGIKGHRGFSGLDGAKGDAGPAGPKGESGGSGENGIPGAMGARGLPGER
GRPGPSGSSGARGNDGNTGAAGPPGPTGPSGPPGFPGGAGAKGETGVAGGRGSEGAQGAR
GEAGNPGPSGAAGAAGAPGSDGSSGAKGSPGNSGIAGAPGFPGSRGPAGAQGAVGAPGPK
GNNGDHGLSGSKGEPGGKGENGPAGVQGLPGPSGEEGKRGGRGEPGGVGARGPSGERGGP
GARGFPGSDGAAGGKGAPGERGANGPAGAQGSTGESGSSGAPGAPGSKGMTGSPGSSGAD
GKSGPAGATGQDGRSGPAGSSGARGQPGVMGFPGPKGVNGDSGKPGERGPSGAGGAVGAP
GKDGDVGAPGPSGIAGPAGEKGEQGSAGSGGFQGLPGPQGATGETGKPGDQGNAGEPGPS
GPSGTRGDRGFPGERGANGIAGPTGGRGSPGPAGNDGAKGEPGAGGAPGGQGAPGMQGMP
GERGSGGLSGAKGERGDGGAKGGDGAGGKDGGRGMNGAIGVPGPPGSQGEKGEGGAGGVS
GPTGPRGSSGERGETGPSGPAGFAGPPGADGQPGAKGESGDSGPKGEAGASGPGGPVGGS
GPQGPSGPSGPKGTRGGAGPPGATGFPGSAGRVGPPGPSGAGGPPGPSGPVGKDGARGNR
GESGPAGRPGEVGGAGSSGLAGEKGSPGSDGAPGTSGIPGPQGISGTRGIVGLPGQRGER
GFSGLPGQSGEPGKQGPSGLLGGRGPPGPAGPPGLSGASGEAGREGSTGHDGSPGRDGAT
GPKGNRGEGGNAGSPGPPGAPGAPGTAGPSGKTGDRGESGAAGSLGPAGPAGVRGPAGPA
GAKGDRGEAGEAGDRGHKGHRGFTGMQGLSGTAGGSGERGPAGASGPAGPRGPSGSNGSP
GKDGMNGLPGPIGPPGPRGRNGEMGPSGPPGSPGPAGPPGPPGGGFDFVSQPIQEKAPDP
FRGGHYRADDPNMMRDRDMEVDTTLKTLTQRVEKIRSPDGTQKSPVRMCRDLKMAHPELK
SDLYWVDPNQGSILDSIKVHCNMETGETCVYPSESSIPMKNWYLSKNIREKKPVWFSESM
TGGFQFQYGTDGADTEDVNIQMTFMRLMSNQASQNMTYHCKNSIAYMDSASGNLKKAVLL
QGSNDVEIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAP
DQEFGVEVGPVCFL
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgctgttgctcagcgcaacagtgcttttggcg
agaggtcaaggcgaggatgacagcacattcggcagctgcacattggaaggacagttgtac
aacgacaaggatgtatggaaaccagagccctgccagatctgcatctgcgacagtggaacc
gtcatgtgcgacgaggtgatctgtgaggacacatccgactgcgccgatcccatcatccca
gacggagagtgctgcccaatctgccccgactccgatggaccccaggttccaggcgagttt
gagccaacaaatggagaaactggagaaactggccccaagggagacaagggtccagctggt
cctcctggcaacgatggcatggatggacagcctgggttccccggccctcccggcccccct
ggcccacctggccttggcggaaacttctctcctcagatgagctacgttgaccactccaaa
tccggcggcggacaacctcaacctggcccaatgggtcccatgggttctcgtggtgctcct
ggacaagctggctcctctggtcctcagggtttcaacggcccccctggagagcccggtgag
cccggagcctctggtcctatgggtcctcgtggttccgctggtccccttggaaagaacgga
gatgatggtgagcccggcaaagctggtcgccccggtgagcgtggagccgctggccctcag
ggagctcgtggattcccaggaacacccggtctgcccggcatcaagggacacagaggattc
agcggtctggatggagctaagggagacgctggacccgctggacccaagggagagtctggt
ggatctggtgagaacggtatccccggcgccatgggtgctcgtggtcttcctggtgagaga
ggccgccctggaccttccggctcttctggtgcccgtggtaatgatggcaacactggcgct
gctggaccccctggacctactggaccttccggtccccctggattccccggtggtgctggt
gctaaaggagagaccggtgtcgcaggaggccgtggaagcgagggagcccagggagctcgt
ggtgaggctggtaacccaggaccctctggagccgctggagctgctggtgcccccggatct
gatggctcctctggtgctaagggttcccctggtaactctggtattgctggtgctcctggt
ttccccggctctcgtggtcctgctggagctcagggagctgttggtgctcctggtcccaag
ggtaacaacggtgatcatggactctctggttctaagggagagcctggtggcaagggagaa
aatggccccgctggagttcagggacttcctggcccctctggtgaggagggcaagagagga
ggacgtggagagcccggtggtgttggagcccgtggaccctctggagagcgcggtggccct
ggtgctcgtggtttccctggatctgatggagcagctggtggcaagggagcccctggtgag
cgtggtgctaatggtccagcgggagctcagggatccaccggtgagtctggaagctccggt
gctcctggcgcacctggatccaagggaatgactggtagccccggaagctccggcgctgat
ggaaagagcggacctgctggtgccactggacaagatggacgctctggacctgctggctca
agtggagccagaggacagcctggagttatgggattccccggacccaagggagttaacggt
gattctggtaagcccggtgagagaggtccctctggtgctggtggtgctgttggcgctcct
ggcaaagatggtgatgttggtgctcctggaccttccggtattgctggacctgctggagag
aagggagagcagggatccgctggatctggcggattccagggtcttcctggaccccaaggt
gctactggtgagactggcaagcctggtgatcagggcaatgctggtgagcctggaccctct
ggcccatctggaacaagaggagacagaggtttccccggtgagcgcggtgccaacggcatt
gctggcccaactggaggccgtggtagtcccggacctgctggtaacgatggagccaaggga
gagcctggtgctggtggtgcccccggtggtcagggagcccccggtatgcagggaatgccc
ggtgagcgaggatctggcggtctgtccggagccaagggagagagaggtgatggtggagcg
aagggaggtgatggtgccggcggcaaagatggcgggcgtggtatgaatggtgctatcgga
gtccctggaccccctggtagtcagggcgagaagggtgagggtggtgccggtggagtttct
ggacctactggtcctcgtggttcctctggcgagcgtggagagaccggaccttctggacct
gctggattcgctggacctcctggtgctgatggtcagcctggtgccaagggagagtctggt
gactctggacccaagggagaggctggtgcttctggacccggcggacccgttggaggctct
ggtcctcagggaccttctggcccatctggacctaaaggtactcgtggtggtgctggaccc
cctggtgctactggtttccctggatctgccggcagagttggaccacctggcccctctgga
gctggcggaccccctggacccagtggacccgtcggcaaagatggagcaagaggaaaccgc
ggtgagagtggtcccgctggtcgccctggtgaggttggtggtgctggatcttcaggactc
gccggagagaagggatctcctggctctgacggagcccctggtacctctggtatccccgga
ccccaaggtatttctggaactcgtggtattgtcggtctccctggacagcgtggagagcgt
ggtttctctggtctgcctggacaatctggtgagcctggaaagcagggaccctctggactt
cttggaggacgtggaccccccggacctgctggaccccctggactgtccggtgcttccgga
gaggctggtcgtgagggatctaccggtcacgatggttcccctggtcgcgatggagccact
ggccccaagggaaaccgtggagagggtggaaatgctggatcccctggaccccctggtgct
cctggagcccccggaactgccggcccctctggcaagactggtgaccgtggagagtctggt
gccgctggatctctcggtcccgctggccctgctggtgtccgtggtcccgctggccctgct
ggtgcaaagggagacagaggagaggctggtgaggctggagacagaggacacaagggacac
agaggattcactggcatgcagggtctgtccggcaccgctggaggctctggagagagagga
cctgctggcgcctctggacctgctggacccagaggaccttctggatctaatggttcccct
ggtaaggatggcatgaacggtctgcctggacccatcggaccccctggacctcgtggtcgc
aatggagagatgggaccttctggacctcccggatctcccggacctgctggaccccctgga
cctcccggcggtggattcgacttcgtcagccagcccattcaggagaaggcacccgatccc
ttccgtggcggccactatcgcgccgacgatcccaacatgatgcgcgatcgcgacatggag
gtcgacaccaccctcaagaccctgactcagagagtcgagaagatccgcagccccgacggt
acccagaagagcccagtccgcatgtgccgtgacctgaagatggcccaccctgagttgaag
agcgacctgtactgggttgaccccaaccagggctccattctggattccatcaaggtccac
tgcaacatggagactggcgagacttgcgtctaccccagcgagtccagcatccccatgaag
aactggtacctcagcaagaacatcagagagaagaagcccgtctggttcagcgagtccatg
accggtggattccagttccagtatggcaccgatggagctgataccgaggacgtcaacatc
cagatgaccttcatgcgcctgatgtccaaccaggcctctcagaacatgacataccactgc
aagaacagcatcgcctacatggactccgccagcggcaacctgaagaaggccgtgctcctc
cagggatccaacgatgtcgagatcagagccgagggcaacagccgcttcacatacagcgtc
agcgaggatggctgcacgtcacacactggcacatggggcaagacagtcatcgactacaag
acatcaaaaacatcccgcctgcccatcattgacattgctcctatggatgttggtgcacct
gatcaggaatttggcgtcgaagttggccccgtttgcttcttgtaa
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integrated database retrieval system
