KEGG   Anarhichas minor (spotted wolffish): 142960274
Entry
142960274         CDS       T11660                                 
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor
  KO
K20131  Rab5 GDP/GTP exchange factor
Organism
amir  Anarhichas minor (spotted wolffish)
Pathway
amir04137  Mitophagy - animal
amir04145  Phagocytosis
Brite
KEGG Orthology (KO) [BR:amir00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    142960274 (rabgef1)
   04137 Mitophagy - animal
    142960274 (rabgef1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:amir04131]
    142960274 (rabgef1)
Membrane trafficking [BR:amir04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab associated proteins
    142960274 (rabgef1)
 Protein recycling
   Other Rab GTPase associated proteins
    142960274 (rabgef1)
SSDB
Motif
Pfam: VPS9 DUF5601 zf-A20 PIN_8
Other DBs
NCBI-GeneID: 142960274
NCBI-ProteinID: XP_075958164
LinkDB
Position
Unknown
AA seq 510 aa
MSQRTERRGGIHVDQSDLLCKKGCGYYGNAGWLGLCSKCWREEYQRVRQKQIQDDWALAE
KLQREEEAAYASSHGAQTQSQSTAPQPHPGHASLGPFSKFEEKKTNEKTRKVTTVKKFFS
PSSRTAPKKETPEGKTPSPSISRRASFDTDQVTKDFADFLKNLQKPGREIQKQCRAFIVN
MSGKKDLGADELSECVQDFYQNLADRLMGHFKGSSESVEQVMDQVEKYIMTRLYKSVFCP
ETTDDEKKDLATQNRIRALHWVTIEMLCVSMDEEIPEVSENVVKAITDVIEMDSKRVPRD
KLGCITSCSKQIFSAIRITKNEPASADDFLPALIYIVLKANPPRLQSNILYITRFCNPSR
LMTGEDGYYFTNLCCAAAFIEKLDAQSLNLSPEEFERYMSGQASPRCNSSEGDWTRAEPP
PAPVNPVLAQLNHNLEVLSGLSSRQETLMEAAQSLQADLLSWPGSVQREVDDVLAKYPLE
VLPRTVSAIDDNDVDNDNLPPPLTPQVFAG
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgagtcagcggacggagcgacggggggggatccacgtggaccaatcggacctgctgtgc
aaaaagggatgcggttattacggcaacgcggggtggctgggcctgtgctccaagtgctgg
agggaggagtaccagcgtgtgcggcagaaacagatccaggacgactgggccttggcagaa
aagttgcagcgggaggaggaggcagcatacgccagcagtcacggagcgcagacacagtcc
cagtccacagcaccacaaccacacccgggccacgcctccctgggacccttctccaagttt
gaggagaagaagaccaatgagaagacacgtaaagtgaccaccgttaagaagttcttcagc
ccctcgtcacgcaccgctcccaaaaaagaaaccccagagggaaagacacccagtccgtca
atcagccgccgtgccagcttcgatacggaccaggtgaccaaagactttgcagacttcttg
aaaaacctccagaagcccggccgggagatccaaaagcagtgccgggccttcattgtgaac
atgtcgggcaagaaggacctgggtgctgacgagctgtcggagtgcgttcaggatttctac
cagaacttggccgaccgtctgatgggtcactttaaaggctcttcagagtctgtggagcag
gtgatggaccaggtggaaaagtacataatgactcgtctgtacaagagcgtattctgtcca
gaaaccactgatgatgagaagaaggacttggccacacagaacaggataagggcgttacac
tgggtgaccatcgagatgctctgtgtgtctatggatgaagaaatccctgaagtctctgag
aatgtggtcaaagcgataacagacgtcattgagatggactcgaagagggttcctcgggac
aaacttgggtgcatcacgagctgcagcaaacaaatcttcagcgccatcaggatcaccaag
aacgagccggcttcagcagacgactttctccccgcgctcatttacatcgtgctcaaagca
aaccctccgcgacttcagtccaacatcctgtacatcacccgcttctgcaaccccagcagg
ctgatgaccggagaggatggatactacttcaccaacctgtgctgtgcagcggctttcatc
gagaagttggacgctcagtccctcaacctttccccggaggagtttgagcgctacatgtcg
ggccaagcctcgccgcgatgcaacagctcagagggcgactggacccgcgccgaaccgcca
ccggcccccgtcaaccccgtcctggctcagttaaaccacaacctggaggtgctgtcgggc
ctgagcagccggcaggagacgctgatggaggccgctcagagcctgcaggccgacctcctc
tcctggcccgggagcgtgcagcgggaggtggacgacgtcctggcgaaataccctctggag
gttctgcctcgcaccgtgtctgccatcgatgacaacgacgtggacaatgacaacctgcca
ccgccactcacgccccaggtgttcgctgggtag

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