Anarhichas minor (spotted wolffish): 142970626
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Entry
142970626 CDS
T11660
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
amir Anarhichas minor (spotted wolffish)
Pathway
amir04510
Focal adhesion
amir04512
ECM-receptor interaction
amir04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
amir00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
142970626 (col2a1b)
04518 Integrin signaling
142970626 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
142970626 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amir00536
]
142970626 (col2a1b)
Glycosaminoglycan binding proteins [BR:
amir00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
142970626 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
142970626
NCBI-ProteinID:
XP_075967080
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLAVVRCQEGDQEDVISCVQDGQRYSDKDVWKPEPCRICVC
DTGTVLCDEIVCEELKDCSKPEIPFGECCPICASDQSPPIGSPGAKGVKGEPGDITDVVG
PRGPGGPMGPPGEQGPRGSRGDKGDKGGLGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGENGQSG
HMGPRGPSGPSGKPGDDGEAGKSGKSGDRGPAGPQGARGFPGTPGLPGIKGHRGYLGIDG
SKGETGSVGSKGESGASGENGAPGPMGPRGLPGERGRPGPSGVGGARGNDGLPGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGSRGESGTPGSSGPSGASGNPGTDGIPG
SKGSSGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGESGPKGEFGPVG
LQGSTGPQGEEGKRGPRGEGGAAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPSG
ASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGGSGEDGRPGPPGPQGARG
QPGVMGFPGPKGATGEPGKSGEKGLGGALGLRGLPGKDGETGPSGPPGPSGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGSQGLQG
PRGLPGTPGTDGPKGAIGPGGAGGAQGPPGLQGMPGERGGAGVPGPKGDRGDLGEKGPEG
APGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFAG
PPGSDGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPSGPSGKDGPKGVRGDGGPPGRQGDAGLRGPAGAAGEKG
DAGDDGPSGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGTTGPAGASGAPGAPGVTG
SVGPTGKQGDRGESGAQGPSGPSGPAGARGMPGPQGPRGDKGDGGESGERGQKGHRGFTG
LQGLPGPPGQSGDQGATGPAGPSGQRGPPGPVGPSGKDGGNGLPGPIGPPGPRGRGGETG
PSGPIGNTGPPGLPGPPGPGIDMSAFAGLGQIEKSPDPLRYMRADQASGNLRQHDAEVDA
TLKSLNNQIENIRSPEGSRKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTIDAIKVFCNM
ETGESCVKSKPASIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAHNTAAIQMTF
LRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDG
CTKHTGQWGKTVMEYRSQKTSRLPIVDIAPMDIGGTDQEFGVEVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtttgtcta
ttagccgttgtaagatgtcaagagggcgaccaggaggatgttattagctgtgtacaggat
ggacagcgctatagcgacaaggacgtgtggaaaccagagccttgtcgcatctgtgtgtgt
gacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgttccaaa
cctgaaatcccatttggagagtgttgccccatctgcgcaagtgaccagtctccacccatt
ggatcacctggagctaagggtgtgaaaggtgaacccggagacattaccgatgttgtagga
ccaagaggaccgggtggcccaatgggcccaccaggagagcaaggaccccgtggatcgaga
ggagacaagggagacaagggaggccttggtccccgcggcagagatggtgagcctggcacc
cccggaaaccccggcccccccggacctccaggacctaatggaccccctggccttggtgga
aactttgctgctcagatggctggtggttttgacgagaaagctggcggcgcacagatgggc
gtgatgcaaggaccaatgggccctatgggtcccagaggaccacctggccccagcggatca
cctggcccacaaggtttccaaggcaacccaggagaggctggagagaacggacagtctggc
cacatgggtccccgtggcccctccggaccttctggaaaacctggagatgatggtgaggcc
ggcaagtctggcaaatcaggcgaccgtggacctgctggacctcagggagctcgtggattc
ccaggaactcctggcctgcctggcatcaagggacacagaggttatctaggtattgatggt
tcaaagggagagactggatctgttgggtccaagggagagtctggtgcttccggagagaat
ggcgctcctggaccgatgggacctcgtggtttgcctggtgagagaggccgtcctggaccc
agtggagttggtggagcacgtggaaatgatggcttgcccggtcctgctggacccccaggc
cctgtcggtccctctggagctccaggcttccctggctctcctggttcaaagggagaagct
ggtcctactggtgctcggggtcctgagggtgctcagggatcccgtggagagtctgggact
cctggttcctccggaccttctggcgcttctggaaaccctggtactgatggtatccctgga
tccaaaggatcatctggtgctcctggtattgctggtgctcctggtttccctggaccccgt
ggacctcccgggcctcagggagcaactggacctctcgggcccaaaggaacatctggagac
ccaggtatcccaggcttcaagggggagtctggacctaaaggagaatttggaccggttggt
ctgcagggaagtactggcccacaaggagaagaaggcaagagaggacctaggggtgagggt
ggtgctgctggaccacttggacctcctggagagagaggatcccccggtaaccgtggtttc
cctggtcaagacggtctggctggtcccaagggagcccctggtgagcgtggaccctctggt
gccagtggtcccaagggtgccaacggtgaccccggccgtcctggagagtctggtctgccc
ggtgccagaggcctgactggacgccctggtgacgctggtcctcaaggcaaagttggacct
tctggaggttctggtgaggacggtcgtccaggaccccccggcccacagggagcccgtgga
cagccgggtgtcatgggattccccggacccaagggagcaactggtgagcctggcaagtct
ggagagaaaggactgggtggagctcttggtctgagaggtctgcctggcaaagatggagaa
accggcccttctggaccccccggcccttctggccctgctggagagagaggagagcaagga
cagcctggaccctcaggtttccagggtctgcctggacctcctggcccccctggtgaggga
ggcaagcctggagaccagggtgttcctggagagggtggagctgctggtgctactggaccc
agaggtgagcgtggtttccccggagagagaggagctgccggctctcagggtctgcaggga
cctcgaggtctgcctggaactcctggaactgacggacccaagggagccattggacctggt
ggagctggtggagctcaaggaccccctggcctgcagggtatgcccggagagagaggaggt
gctggcgttcctggacccaaaggagacagaggtgacctcggagagaaaggacctgaaggt
gctcccggcaaagatggtggcagaggtctcactggtcccattggtcctcctggtcctggt
ggtcccaatggcgagaagggtgaatctggtcctgctggtccttctggagctcctggtacc
cgtggtgctcctggggacaggggtgagactggacctcctgggcctgctggatttgctgga
cctcctggttctgacggtcagccaggaatcaagggagagcagggagaatctggacagaag
ggtgacgctggggcccctggacctcaaggaccctctggtgcccctggacctgcaggtcct
accggtgtttttggacctaaaggtgctcgtggtgctcagggacctcctggtgccactggt
ttccctggagctgctggccgagttggaccccctggtcctaatggtaatcctggacctgct
ggtccttccggcccatccggtaaagatggacccaagggtgtgaggggagatggtggaccc
ccaggcagacagggtgacgctgggctccgtggtccagctggagctgctggagagaaggga
gatgccggagatgatggtccctctggtcccctcggtccttcaggtcctcagggtttggct
ggtcagcgcggtatcgtcggtctgcccggacagcgtggtgagagaggtttccctggtctg
cctggaccttctggtgagcctggaaagcagggagctcctggtggcagtggagaccgcgga
ccccctggacctgttggaccacctggacttactggacctgcaggagagcctggcagagag
ggcaacgctggatctgatggacctcctggtagagatggtgctactggaatcaagggtgat
cgtggtaccactggtcctgctggtgcttctggtgctccaggcgctcctggtgttaccggc
tcagttggtcccaccggcaaacagggagacagaggagagtctggtgcacaaggaccttct
ggaccttcaggacctgctggagccagaggaatgcctggaccccaaggaccccgcggtgac
aagggtgatggtggagagtctggtgagagaggacagaagggacacagaggcttcactggt
ctgcagggtctgcctggacctccgggtcaatctggagaccagggtgctactggacctgct
ggaccttctggacaaagaggaccacctggacctgttggccccagtggaaaggatggtgga
aacggtctgccaggaccaattggaccccccggaccacgtggtcgtggtggagagaccggt
ccctctggtcctattggaaacaccggaccccccggtctgcctggtccccctggcccaggc
attgacatgtccgccttcgctggtcttggtcagattgaaaagtcccctgatcctctcagg
tacatgagggccgaccaggcttcaggaaacctccgtcagcacgatgctgaggtcgacgcc
actctcaaatctctcaacaaccaaattgagaacatccgtagcccggagggatccaggaag
aacccggctcgcacctgcagagacctgaagctgtgccatcctgactggaagagcggagac
tactggattgatcccaatcagggctgcaccatcgatgcaatcaaggtcttctgcaacatg
gagacaggagagtcctgcgtcaaatccaagcctgccagcatccctcgcaagaactggtgg
tccagcaagagcaaggaccgcaaacatgtctggttcggagagacaatgaacggcggattc
cacttcagctatggtgacgacagcctggcacacaacactgctgccattcagatgactttc
ctgagactgctgtccaccgaggcttctcaaaacctcacctaccactgtaagaacagtgtg
gcctacatggacgcctcaacgggcaacctgaagaaggccgttctgctgcagggctccaac
gacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgatggaggacggc
tgcacgaaacacacgggacagtggggcaagacagtgatggaatacagatcgcagaagacc
tctcgtctgcccattgtagacattgcccccatggatattggaggaacagaccaggagttc
ggagtcgaagtcggggcagtctgcttcttgtaa
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integrated database retrieval system
