Aminobacter sp. Y103A: Amn_23690
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Entry
Amn_23690 CDS
T09420
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
amis
Aminobacter sp. Y103A
Brite
KEGG Orthology (KO) [BR:
amis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amis03016
]
Amn_23690
Enzymes [BR:
amis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Amn_23690
Transfer RNA biogenesis [BR:
amis03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Amn_23690
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
BBD37489
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Position
complement(2478145..2479302)
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AA seq
385 aa
AA seq
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MHVITTQDELETVIAALEKSNFVTVDTEFIRETTFWPELCLIQMAAPGVSALVDPLAPDL
DLKPFFRLMANEAVTKVFHAARQDIEIIFHLGALIPHPVFDTQVAAMVCGFGDSVSYEQI
VQKITGGRIDKSSRFTDWRHRPLSEKQLDYALADVTHLIDVYKHLVTELERENRAHWLNE
EMEVLTSRETYDPHPEDAWKRLKMRLRKPQELAIVQAVAAWREREARERNVPRGRVLKDD
AIYEVAQQAPRDATALARLRTTPKGWERSSSATALLTVVNAALEIPRDQMPKLPKTFQPP
EGSSAASELLKVLLRLVSEKEGVAPKVLASGDDIDRIAAEGEAADVPALQGWRRSVFGEA
ALKLVRGELAIRFDKRRISVFEVNS
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtaataacgacccaggacgaactcgaaaccgtcatagccgctctcgaaaagtcc
aacttcgtcacggtagacaccgagttcattcgcgaaaccactttctggcccgagctctgc
ctgatccagatggcagcgcccggcgtttccgcactggtcgatcccctggcgcccgacctc
gacctcaagccattcttccggctgatggccaatgaggcggtgaccaaggttttccatgcc
gcccgccaagacatcgaaatcatcttccatctcggcgcactgatcccgcacccggtgttc
gatacccaggtcgccgccatggtctgtggcttcggcgacagcgtctcctacgagcagatc
gtgcagaagatcaccggcggacgcatcgacaagtcatcgcgcttcaccgactggcgccac
cgcccgctgtcggaaaagcagctcgactatgcgctggccgacgtcacacacctgatcgac
gtctacaagcatctcgtcaccgagctcgagcgcgagaatcgcgcccactggctcaatgaa
gagatggaggtcctgacctcacgcgagacctacgacccgcatcccgaggacgcctggaag
cggctgaagatgcgcctgcgcaagccgcaggaactggccatcgtgcaggcagtggctgcc
tggcgtgagcgcgaggcgcgcgagcgcaacgtgccgcgtggccgcgtgctcaaggacgac
gcgatctacgaagtcgcccagcaggcgccacgcgatgcaaccgcacttgcccgactgcgc
accacgcccaagggctgggaacgttcgtcgtcggcgacggcgctgctcaccgtcgtcaac
gcggcgctcgaaattccgcgcgaccagatgcccaagctgcccaagacattccagccgccg
gagggctccagtgccgcctccgagctgctcaaggtgctgctgcggctcgtctcggagaag
gaaggcgttgcccccaaggtgctcgcttcgggcgacgatatcgaccgtatcgccgcagaa
ggcgaagctgccgacgtccctgccctgcagggctggcgccgttcggtgttcggcgaggca
gcactgaagctggtgcgcggcgaactggccatccgcttcgacaagcgccggatctcggtg
ttcgaggtcaacagctga
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