Aminobacter sp. Y103A: Amn_29250
Help
Entry
Amn_29250 CDS
T09420
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amis
Aminobacter sp. Y103A
Pathway
amis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Amn_29250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amis03021
]
Amn_29250
03400 DNA repair and recombination proteins [BR:
amis03400
]
Amn_29250
Enzymes [BR:
amis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Amn_29250
Transcription machinery [BR:
amis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Amn_29250
DNA repair and recombination proteins [BR:
amis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Amn_29250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Phage_cement_4
DUF6744
RnfC_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BBD38045
LinkDB
All DBs
Position
complement(3033743..3037939)
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVMNLFNPQAPAQVFDSIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTALKEHQLLGEEEYQIAVDEYGEDSFTA
MIGAEAIHDLLASMDLEKIAGDLRSELATTTSELKQKKYLKRLKVVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPASGAPIIVPSQDMVLGLYYLSIVNQNEPGEGMVFADMGELQHALE
TKAVTLHAKIKGRFRTVDAEGNVVSKIHDTTPGRMIIGELLPKNVNVPYDTANQEMTKKN
ISKMIDTVYRHCGQKETVIFCDRIMALGFAHACRAGISFGKDDMLIPDTKEKLVADTEAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCSEKVADEMMARIKAVEFEDSGRQKPMNSIYM
MSHSGARGSPTQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMQPIVDAGQVVASLGLRILGRTA
LDDINHPVTGDLLVKGGTLMDERDIEVIEKAGVQSVRIRSALTCEVKVGVCAVCYGRDLA
RGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDSSFLEASYEGKVEIRNRNV
VRNSDGNLVVMGRNMAILILDETGKERATHRVTYGSRIFVDDGDKVKRGQRIAEWDPYTR
PILTEIEGRVAFEDLVDGISVQETADESTGITKREVIDWRSTPRGNDLKPAIVVQDSKGK
VGKLSKGGDARFLLSVEAILSVEPGAQVRPGDVLARIPMESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTVRFGRDYKNKRRIIIEPHDSTLEPVEYLIPKGKPFHLQDGDAIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVEI
TAQGDSIYIPGDHVDVIEFDEINERLIEEGKKPAEGQPVLLGITKASLQTPSFISAASFQ
ETTRVLTEAAVAGKTDMLQGLKENVIVGRLIPAGTGGMMSQIRRIATSRDELILDERRKL
SGAEVAEPILTDMVNAAQ
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatctcttcaacccccaggcgcctgcgcaggtgttcgattcc
atccggatttcgctcgccagccctgagaagattctgtcctggtcgttcggcgaaatcaaa
aagccggagacgatcaactaccgcaccttcaagccggagcgtgacgggctgttctgcgcc
cgcatctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgaaaagtgcggcgtggaagtcaccctgtcgcgcgttcgccgc
gagcgcatgggccacatcgagctcgcagcgcccgtcgcccacatctggttcttgaagtcg
ctgccgagccgcatcggcacgctgctcgacatgacgctcaaggatatcgagcgcgtcctg
tatttcgagaactacatcgttaccgagccgggcctgaccgcactcaaggagcaccagctc
ctcggcgaggaagagtaccagatcgctgtcgacgagtatggcgaggacagcttcaccgcc
atgatcggcgctgaagccattcacgacctgctcgcctcgatggatctcgagaagatcgcc
ggcgacctgcgctccgagcttgcgacgacgacgtcggaactgaagcagaagaagtatctc
aagcgcctcaaggtggttgagaacttcatggagtcgggcaaccgccccgagtggatgatc
atgaaggtcgtgccggtgatcccgccggacctgcgtccgctggtcccgctggacggcggt
cgctttgcgacgtccgacctgaacgatctctatcgccgcgtcatcaatcgcaacaaccgc
ctgaagcgcctgatcgagctccgtgcgccggggatcatcatccgcaacgagaagcgcatg
ctgcaggaggccgtcgacgctctgttcgacaatggccgccgtggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggagctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctacgctcgtctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggtcgagaaggaaaagcctgaggtttgggatatcctcgacgaggtcatccgcgag
catccggttctgctcaaccgcgcaccgacgctgcaccgcctgggcatccaggccttcgaa
cccacgctgatcgaaggcaaggcgatccagctgcacccgctcgtctgcacagccttcaac
gccgacttcgacggcgaccagatggctgtccacgttccgctgtcgcttgaggctcagctc
gaagcacgcgtgctgatgatgtcgaccaacaacatcctgcacccggcttccggcgcgccg
atcatcgtgccgtcgcaggacatggttctcggtctctattacctctcgatcgtcaaccag
aacgagccgggcgagggcatggtgtttgccgacatgggcgaactccagcacgcgcttgag
accaaggctgtcacgctgcacgccaagatcaagggtcgcttccgcacggtcgacgccgaa
ggcaatgtcgtgtccaagatccacgacacgacccctggccgcatgatcatcggcgaactg
ctgccgaagaacgtcaacgtgccgtatgacaccgcgaaccaggagatgaccaagaagaac
atctccaagatgatcgacaccgtctaccgccactgcggtcagaaagagacggtcatcttc
tgcgatcgcatcatggctctcggcttcgctcatgcctgccgcgccggcatttcgttcggc
aaggacgacatgctgatcccggataccaaggagaagctggtcgccgacaccgaggctttg
gccaaggaatacgagcagcagtacaatgacggcctgatcacccagggcgagaagtacaac
aaggtcgtcgacgcctgggccaagtgctcggaaaaggtcgccgacgaaatgatggcccgc
atcaaggcggtcgagttcgaggacagcggtcgtcagaagccgatgaactcgatctacatg
atgtcgcactccggtgcgcgtggttcgcccactcagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggtgaaatcatcgagacgccgatcatttccaacttcaag
gaaggtctgacggttctcgagtacttcaactcgacccacggcgcccgcaagggtctcgcg
gataccgctctgaagacggcaaactccggctacctgacccgtcgtctcgtcgacgtggcg
caggactgcatcgtcaactcggttgattgcggcaccgacaagggcctcaccatgcagccg
atcgtcgatgccggccaggttgtcgcttcgctcggcctgcgcattctcggccgcaccgcg
ctcgacgacatcaaccacccggtcactggcgatctgctggtcaagggcggcacgctcatg
gacgagcgtgacatcgaggtcatcgagaaggctggcgtccagtcggttcgcatccgttcg
gccctgacctgcgaagtcaaggtcggtgtctgcgcggtctgctacggtcgcgacctggca
cgcggtacccctgtcaaccagggcgaagctgtcggcgtcatcgccgctcaatcgatcggc
gagccgggcacgcagctcaccatgcgtaccttccacatgggcggtaccgcgcaggtggtg
gacagctcgttccttgaagcctcgtatgagggcaaggtcgagatccgcaaccgcaacgtg
gttcgcaactccgacggcaacctcgtcgtgatgggccgcaacatggcgatcctgatcctc
gacgagaccggcaaggagcgcgccacccaccgcgtcacttatggttcgcgtatcttcgtg
gacgatggcgacaaggtgaagcgcggccagcgtatcgccgagtgggatccctacacccgt
ccgatcctcaccgaaatcgaaggccgtgtggcgttcgaggatctggtcgacggcatttcc
gtccaggaaacggccgacgagtcgaccggcatcaccaagcgtgaggtcatcgactggcgg
tcgaccccgcgcggcaacgacctgaagccggcgatcgtggttcaggactccaagggcaag
gttggcaagctgtcgaagggcggcgatgcccgcttcctgctctcggtcgaggccattctc
tcggtcgagccgggtgcacaggttcgccctggcgatgttctggcgcgtatcccgatggaa
agcgcgaagactaaggacatcaccggcggtctgccgcgtgttgccgagctcttcgaagcc
cgtcgtccaaaggatcacgccatcatcgccgagatcgatggtacggtccgcttcggtcgc
gactataagaacaagcgccgcatcatcatcgagccgcatgactcgacgcttgaaccggtc
gaatacctgatcccgaagggcaagccgttccatctccaggacggcgacgccatcgaaaag
ggcgactacatcctcgacggcaacccggcgccgcacgacatcctggccatcaagggcgtg
gaagctctcgcttcctacctcgtcaatgaaatccaggaagtctaccgactgcagggcgtg
tcgatcaacgacaagcacatcgaggtcattgtccggcagatgctgcagaaggtcgagatc
accgcacagggcgactctatctatatcccgggcgatcacgtcgatgtcatcgagttcgac
gagatcaacgagcgcctgatcgaggaaggcaagaagcctgccgaaggtcagccggttctg
ctcggtatcaccaaggcatcgctgcagacgccgtccttcatctcggccgcttccttccag
gaaacgacccgcgtgctcaccgaagcagctgtcgccggcaagaccgacatgctgcagggc
ctgaaggaaaacgtcatcgtcggccgcctgatcccggccggcacgggcggcatgatgagc
cagatccggcgcatcgccacctcgcgcgacgagctgatcctcgacgagcgccgcaagctc
tcgggtgcggaagtggccgagccgatcctgaccgacatggtcaacgccgctcagtaa
DBGET
integrated database retrieval system
