Aminobacter sp. Y103A: Amn_29580
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Entry
Amn_29580 CDS
T09420
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amis
Aminobacter sp. Y103A
Pathway
amis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Amn_29580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amis03019
]
Amn_29580
03009 Ribosome biogenesis [BR:
amis03009
]
Amn_29580
Enzymes [BR:
amis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Amn_29580
Messenger RNA biogenesis [BR:
amis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Amn_29580
Ribosome biogenesis [BR:
amis03009
]
Prokaryotic type
rRNA processing factors
Amn_29580
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BBD38078
LinkDB
All DBs
Position
3071872..3074742
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AA seq
956 aa
AA seq
DB search
MPNKMLIDASHPEETRVVVVRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAEEAEDEDDENNDGDESKSQDRNRGRR
RRRGGKNRDRNDENKPEGSGDDDSASSEDDGDSIAASDASDANGDEHATETSSDEGNGGS
DEREPTSIAASVDADVVSERAPEPTVTENENGGVIEEVHSTHHDDHEIESVGAEDALEEV
RNRRKPVRRHYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGG
GISRKITNAQDRKRLKEVVADLEVPKGMGVILRTAGESRTKAEIKRDYEYLMRLWENVRS
LTLQSTAPALVYEEGSLIKRSVRDLYNKDIDEVLVAGEDGYREAKDFMRMLMPSHAKVVQ
PYRDITPIFVRSGIESQLERMVQPQVTLKSGGYIIINQTEALVAIDVNSGRSTKEHSIEE
TALHTNLEAAEEVARQLRLRDLAGLIVIDFIDMEENRNNRAVEKKLKDCLKNDRARIQVG
RISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGHVRSDSSVALQVVRAIEEFLLKDSRS
HITVKTPVATALYVLNHKRSTLVDLENRFGVTVTLEADDSVGSQNHAIFRGAIAEKPANF
ALPVAAPAYEEPEEIEDEIVEEEAETVVVEAQPARAPQPAAAEGGEQHDRKRRKRRRRRG
GRDRDREHGAPQEGAVVAGEANEAEDGEEDVAAEAVVSEEAGEIAAVDASAAEDAAAKKR
RRGKRGGKRNRKEDDEQSAEGSEQVAGDEGAAAETVASEVVTAEVAVVEVAAEEPEAVIE
AKPKKAPRRSAKAKKAEAEAAAAEAPAAEVVAEAAAPEAETKPGKKAAKPRAPRRKAAAA
PAEDEVVSEAPSTEPPAAAAIAPATPVVTSVVETEEAAAGEAKPKKGGWWQRKGFF
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgctgatagacgcctcccacccggaggaaacacgggttgtcgttgtt
cgcggtaaccgtattgaagaatttgatttcgaatcacaggacaagaagcagctcaaagga
aacatctacctcgcccgcgtaacgcgggttgagccgtctctccaggctgcctttgtcgag
tatggcggaaaccgtcacggcttcctcgccttcagcgaaatccatcccgactattaccag
attccggttgccgatcggcaggcgctgctgcgcgccgaggcggaagaagccgaggacgag
gacgacgaaaacaacgacggcgacgagagcaagagccaggatcgtaaccgtggccgccgc
aggcgccgcggcggcaagaaccgtgaccgcaacgacgagaacaagccggagggttcgggc
gacgacgacagcgcgtcttccgaggacgatggcgattcgatcgccgcaagcgatgcttcg
gacgccaatggtgacgagcacgccacagagacgtccagcgatgaaggcaatggcggttcc
gacgagcgcgaaccgacgtcgatcgccgcatcggtcgatgccgacgtcgtgtccgagcgg
gctcctgagccgacggtcaccgaaaacgaaaacggcggcgtgatcgaggaagtgcattcg
acccatcacgacgatcacgagatcgaatcggtcggcgccgaagacgcactcgaagaggtg
cgcaaccgccgcaagccggttcgccgccactacaagatccaggaagtcatcaagcgccgc
cagatcctgctggtccaggtggtcaaggaagagcgcggcaacaagggcgctgctctcacg
acctacctgtcgctcgccggccgctactcggtgctgatgcccaacacggcacgcggcggc
ggcatttcgcgcaagatcaccaacgcccaggaccgcaagcgtctgaaggaggtcgttgcc
gatctcgaagtgccgaagggcatgggcgtcatcctgcgcaccgcaggtgaaagccgcacc
aaggccgagatcaagcgcgactacgagtacctgatgcgcctgtgggagaacgtccgcagc
ctgacgctgcagtcgacggccccggcactggtctatgaggagggcagcctgatcaagcga
tcggtgcgcgacctctacaacaaggacatcgacgaggttctggtcgccggcgaagacggc
tatcgagaggccaaggacttcatgcgcatgctgatgcccagccatgccaaggtcgtccag
ccttaccgcgacatcacgccgatcttcgtacgcagcggcatcgaatcgcagctcgaacgt
atggtccagccgcaggtgacgctgaagtcgggcggctacatcatcatcaaccagaccgaa
gcgctggttgccatcgacgtcaactccgggcgctccaccaaggagcactcgatcgaggaa
accgcccttcacaccaaccttgaagccgccgaggaagtcgcgcgccagctcaggctgcgc
gatctcgccggcctgatcgtcatcgacttcatcgacatggaggagaaccgcaacaaccgt
gcggtcgaaaagaagctcaaggactgcctgaagaacgaccgcgcccgcatccaggtcggc
cgcatctcgcatttcggcctgatggagatgtcgcgccagcgcatccgcgccagcgtgctg
gaatcgacgatgaagccctgcccgcattgcggcggaaccggtcatgtccgttcggactcg
tcggtggcactccaggtcgtgcgcgcgatcgaagagttcctgctcaaggactcgcgcagc
cacatcacggtcaagacgccggttgcgaccgcgctctacgtgctcaaccacaagcgctcg
acgctggtcgatctcgaaaaccgcttcggtgtgaccgtcacactcgaggccgatgacagc
gtcggttcgcagaaccacgccatcttccgcggtgccattgccgagaagccggcaaacttc
gccctgcccgtcgcagctccggcctatgaagagccagaggaaatcgaagacgagatcgtc
gaagaggaagcagagaccgtcgtcgtcgaggcgcagcccgcccgcgcgccgcagccggct
gcggccgaaggcggcgagcagcacgaccgcaagcggcgcaagcgccggcgtcgccgtggc
ggccgcgaccgtgaccgcgagcatggcgctcctcaggaaggtgccgtcgtcgctggcgag
gccaacgaagccgaagatggcgaagaggacgtcgccgctgaagccgttgtgtccgaggaa
gccggtgaaatcgccgctgtcgacgcaagcgctgccgaagatgccgccgccaagaagcgc
cgtcgcggcaagcgtggcggtaagcgtaaccgcaaggaagacgacgagcagtcggcggaa
ggtagcgaacaggtcgcaggcgacgaaggcgccgctgccgaaaccgttgccagcgaagtc
gtgacggcggaagtggcggtggtcgaggttgccgctgaagagccggaggccgtcatcgaa
gccaagccgaagaaggcgccgcgccgctcggcaaaggccaagaaggctgaggccgaagca
gcagccgctgaagcgcccgccgccgaagtcgttgccgaggctgcagcgccggaagctgaa
acgaagcccggaaagaaggcggcaaagccgcgtgcgccacgtcgcaaggctgccgcagcc
ccagccgaggatgaggtcgtctccgaagcccccagcactgaaccccctgccgcggctgca
atcgcgcctgcgacgcctgtcgtcacctcggtcgtcgagaccgaagaagctgccgctggc
gaagccaagccgaaaaaaggcggctggtggcagcgcaagggctttttctaa
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