Aminobacter sp. Y103A: Amn_54240
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Entry
Amn_54240 CDS
T09420
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
amis
Aminobacter sp. Y103A
Pathway
amis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Amn_54240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amis03021
]
Amn_54240
03019 Messenger RNA biogenesis [BR:
amis03019
]
Amn_54240
Transcription machinery [BR:
amis03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Amn_54240
Messenger RNA biogenesis [BR:
amis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Amn_54240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
AAA_22
S1CSD-TOTE-2
NACHT
DnaB_C
ANAPC4_WD40
Motif
Other DBs
NCBI-ProteinID:
BBD40544
LinkDB
All DBs
Position
complement(5604395..5605651)
Genome browser
AA seq
418 aa
AA seq
DB search
MKLQDFKNKKPTDLIAFAESLEVENASVMRKQELMFAILKKLAAQDIEIIGDGVVEVLQD
GFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVNTIN
FDDPEKIRHKIHFDNLTPLYPTSRLKMEVENPTTKDISPRVIDLVAPLGKGQRALIVAQP
RTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHV
QVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIYPAMDI
LKSGTRKEDLLVQRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKTNADFFDSMNT
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaaactacaggatttcaagaacaagaagccgaccgacctgatcgcgttcgctgagtcg
cttgaagtcgaaaatgccagcgtcatgcgcaagcaggagctgatgttcgcgatcctcaag
aagttggcggcgcaggacatcgagatcattggcgacggcgtcgtcgaggtgctccaggac
ggcttcggcttcctgcggtcggccaacgccaattaccttccgggtccggacgatatctac
atctcgccctcgcagatccgccgcttctcgctgaagaccggcgatacggtcgaaggcccg
atccgcagccccaaggaaggcgagcgttatttcgcgctgctcaaggtcaacaccatcaat
ttcgacgatcccgaaaagatccgtcacaagattcatttcgacaatctgacgccgctgtac
ccgacctcgcggctcaagatggaagtcgaaaacccgaccaccaaggacatttcgccccgc
gtcatcgacctggtggcgccactcggcaagggtcagcgcgccctgatcgtggcgcagccg
cgtaccggcaagaccgtgctgctgcagaacattgcgcactcgatcaccaccaatcatccc
gaatgctatctgatcgtgcttctgatcgacgagcgtccggaagaagtgaccgacatgcag
cgctcggtgaagggcgaggtcgtgtcctcgaccttcgacgaaccggctgtccgtcacgtc
caggtcgccgaaatggtcatcgagaaggccaagcgccttgtcgaacatggccgcgacgtc
gtcatcctgctcgattcgatcacccgtctcggccgcgcctacaacaccgtcgtgccgtca
tccggcaaggttctgaccggtggtgtcgacgccaacgcgctgcagcggccgaagcgcttc
ttcggtgccgcccgtaacattgaagagggtggttcgctgaccatcatcgccaccgcgctg
atcgataccggcagccgcatggacgaagtcatcttcgaagagttcaagggtaccggcaac
tcggaaatcgtgctcgaccgcaaggtcgccgacaagcgtatctatccggcgatggacatc
ctcaagtcgggcacgcgcaaggaggacctgttggtccagcgtcaggatctgcagaagatt
ttcgtgctgcgccgcattctggcaccgatgggaacgaccgatgcaatcgagttcctcatc
gacaagctcaagcagaccaagaccaatgccgatttcttcgattcgatgaatacctga
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