Aerococcus mictus: DBT49_0000565
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Entry
DBT49_0000565 CDS
T09409
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
amit
Aerococcus mictus
Brite
KEGG Orthology (KO) [BR:
amit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amit03009
]
DBT49_0000565 (rlmD)
Enzymes [BR:
amit01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DBT49_0000565 (rlmD)
Ribosome biogenesis [BR:
amit03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DBT49_0000565 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
MTS
PrmA
Cons_hypoth95
Methyltransf_11
PCMT
N6_N4_Mtase
UPF0020
FtsJ
Methyltransf_12
Methyltransf_32
RrnaAD
Methyltransf_4
N6_Mtase
Methyltrans_SAM
Motif
Other DBs
NCBI-ProteinID:
WMF94579
LinkDB
All DBs
Position
132163..133818
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AA seq
551 aa
AA seq
DB search
MAKKKWQAPVKKNQILDVTITDLTYEGMGVAKIDRYPLFIQNALVGEDCQVKVVKVLKKF
AFAIVLKRYNDADSRVPLRDENGLRTGTMPLQHMAYPAQLAFKRQQVINSLQKQGLLDQT
QVLETIGMEEPWHYRNKAQIPIGQADGQLYTGFYRKGSHKLVPMTDYQIQLPGIDQTLQK
VVTILNQYPISAYDEDSHQGLLRHLIVRQGYYTGQVMLVIVINGKMLPDEEKIVAALKAE
IPDLVSIVINSNQKNTNVIMGQDQRVVYGEDLYEDRMFDLTFRISSKSFFQVNTSQAEKL
YHQALEAADLKGDEVVVDAYCGIGTISLCLAQAAKEVYGVEVVPDAIDQARENAQLNGLD
NVTFQAGKAEEVIQDWVQAGLKPDVVVVDPPRKGLAEDFIQSVLEVQPPKIVYVSCNPAT
LARDLAKFVDQGYQLGKVQPVDMFPQTHHVETVALLSKLNTEHHLDIEIGEDELSEIDFS
KDATYGEIKKYVLDKYGLKVSSLYIAQIKRKHGLIERENYNFSKKENQRVPNCPEEKEKA
IEDALEHFGMI
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaaaatggcaagcgccagttaagaagaatcaaatactcgatgtcaccatc
actgacctaacttatgaaggcatgggtgtggctaaaatcgaccgctaccccctcttcatt
caaaatgccttggtgggggaggactgccaggtcaaggtggttaaagtgctcaagaagttt
gcctttgcgattgtcctcaaacgctataatgatgcggatagtcgcgttcccctccgtgat
gaaaatggcctaagaacgggaaccatgcccctccaacacatggcctatcccgcccagctc
gctttcaagcgccaacaggtgatcaacagcttacaaaaacaaggcctgcttgaccaaacc
caagtcctagaaaccatcggcatggaagagccttggcactaccgcaataaggctcaaatt
ccgattggccaagcggatggccagctctatactggcttttaccgcaaggggtcccataaa
ttagtccctatgactgattaccaaattcaactgcctgggattgaccagaccttacaaaaa
gtagtgaccatccttaaccagtatcccatttctgcctatgatgaagactcccatcaaggc
ctactccgccatctgatcgttcgccagggttactatactggccaagtcatgttggtgatt
gtgattaatgggaaaatgctccctgatgaagagaaaatcgttgcagcactcaaagctgaa
attcctgacttagtttctattgtgattaattctaaccagaaaaataccaatgttattatg
ggccaagaccaacgggtggtttatggcgaggacctttatgaagaccgcatgtttgacttg
acctttcggatttcctccaagtctttcttccaggtcaacaccagccaagcggaaaaactc
taccatcaagccctggaagccgctgatcttaagggcgatgaagtggtggtggacgcttat
tgtgggattgggaccatttcgctttgtctcgcccaagccgctaaagaggtctatggggtc
gaggtagttcctgatgccattgaccaagcccgcgaaaacgctcagctcaatggactggat
aatgtgaccttccaagctggaaaagcagaagaagtcatccaggactgggtccaagcggga
cttaaacccgatgtcgttgtcgttgacccaccacgcaaggggctagcggaagactttatc
cagtctgtcttagaggtccaaccgcctaaaatcgtctatgtctcctgcaatcctgccact
ctagcccgtgatttagctaaatttgtcgaccagggctatcaactgggtaaggttcaaccc
gtagatatgttcccgcaaacccaccacgttgagacggtagctctgttgtccaaactaaat
acagaacatcatttagatatagaaataggggaagatgaattatctgaaattgacttttca
aaagacgcaacttatggagaaattaaaaagtatgtgttagataaatacggactaaaagtt
tcaagcctatatattgcacaaataaaaaggaaacatggtctaatagagagagaaaattat
aattttagtaagaaagaaaatcaaagagtgccaaattgcccagaagaaaaagaaaaagca
atcgaagatgctttagagcattttggaatgatttaa
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