Aerococcus mictus: DBT49_0007870
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Entry
DBT49_0007870 CDS
T09409
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amit
Aerococcus mictus
Pathway
amit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DBT49_0007870 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amit03400
]
DBT49_0007870 (mfd)
Enzymes [BR:
amit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DBT49_0007870 (mfd)
DNA repair and recombination proteins [BR:
amit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DBT49_0007870 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
WMF96319
LinkDB
All DBs
Position
complement(1709761..1713306)
Genome browser
AA seq
1181 aa
AA seq
DB search
MNLENYLNEKIIDSKLENTLRTGQSVLYLGLQAASKAYMIAEIQASHPDKKTVVLTNNLL
QAERFYEDLQTFNPEADLHLYSSPESVAEDLAIQSPEALGDRLATLDWLLDEDSSGILIS
PIFGLKRPLTPVAEWKHLVKSIQRGQELAVDQLKADLLLLGYERVEAVLRPGEMSVRGDI
VDLFPLTSSQPLRLSLAFDEVERITTFDVNSQKSQEDLEAVTILPAKDLLFSPDRLKAGV
THLEKVAQEKVEKLQDEAIKKQVQAIFQDEIQAWSAGERTERTHYFSQILYPDSCSLLDY
VGEGQTLVMDDMTRLIELSQEIDQRAALYLQGKVEAGHLPPIDQIYLDSHDQVMAYSGRK
FYLAQWQKGYGNMRFDGLYQFQTRTVTPFYHNKEAIKLEFEAWLRMGRSLLIFIEEEDKA
RDLEKDLKAMDFQAVLTQADQIIPEAINIIAGQLSGGIEFVDSQVVLLAQSDLFDQAKRR
RRKNTNNLSNAERLKSYQELNPGDYVVHVNHGIGQFVGVETIEVAGNHKDYLSIVYADNA
SIHVPIDQIDLVQKYVSAEGKSPKLNKMGGTEWQKTKQRVSKKIEDIADDLVDLYAERET
RKGYAFSPDNEDQAAFEDEFPYPETDDQLRSIQEIKADMEKEKPMDRLLVGDVGFGKTEV
AMRAAFKAMLDGKQVAFLVPTTVLAQQHYETMLERFKDYPFTIDLLSRFRSPAEQKHVIK
GLKEGSVQLVIGTHRLLSKDIKFLDLGLLVVDEEQRFGVKAKERLKALRKNVDVLTLTAT
PIPRTLNMSMMGVRDLSVIETPPANRFPVQTYVMEQNYGAIRDAIERELARNGQVFYLFN
NVQNIQEKANFIEELVPQARVAIAHGQMHANQLEEVLMDFLAGDDDVLVTTTIIETGIDM
PNVNTLLVEDADRMGLSTLYQLRGRVGRSNRVAYAYFMYRPDKALNEASEKRLTALKDFT
ELGAGFKIAMRDLSIRGAGNLLGQEQHGFVNSVGYDLFQQMLDEAIRKKQGKAAKRPQSP
TEIELHIDAYIPSEYIQDENQKVEIYKRINLLEDVDAMWDLDDELLDRFGEPPVEVQWLL
AVGAMKSYATAIGVEKITRKGKAIELVFTKQQDPSQLTPLIFQALEDIPMKLQIKMANDQ
LVMQLNTKDLSTDQWLDYLLQFLTQLSKDLKADSDQAEGED
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaacttagaaaattatctcaatgagaaaattattgacagcaagctagaaaacaccttg
aggacggggcagagtgttctttacctgggtttacaggcggctagtaaggcctacatgatt
gctgaaattcaagccagccatcccgataaaaagaccgtggtcttgaccaataacctcttg
caggcggagcgtttttatgaagacctgcaaactttcaatccagaagctgatctccacctc
tattccagtccagaaagtgtggctgaagacttagccattcaaagcccggaagccctgggg
gaccgcttggcgaccttagactggttacttgatgaagacagtagcggaatcttaattagc
cctatctttggcttaaagcgccccctgacgcctgtggctgagtggaaacacctagtaaaa
agcatccaacggggccaagaactcgccgttgaccagctgaaagcagatcttttgctttta
ggttatgaacgggtagaggctgttttacgacctggtgaaatgagtgtccgtggggatatt
gttgacctctttcccctaaccagttcccagcccttgcgactgtctttagctttcgatgaa
gtagagcgcattacgacttttgacgttaacagccaaaagagccaagaggacttagaagca
gtcaccatcttaccggctaaggacctcttgtttagccctgaccgcctaaaagctggcgta
actcatttagaaaaagtggcccaagagaaagttgaaaagctccaagatgaagccatcaaa
aaacaagtccaagccatcttccaggatgaaatccaagcttggtcagctggggaaaggacc
gaacggacccattattttagtcagatcctctatccagactcctgcagcctcctcgattat
gtgggggaggggcagaccctagtgatggatgatatgacccggctgattgaattgtcccaa
gaaattgaccagcgcgccgccctttatcttcaaggtaaggtggaggctggccacttgcct
ccaattgaccagatctatttagatagtcacgaccaagtgatggcttattcggggcggaag
ttttacctggcccagtggcagaagggttacggcaatatgcgctttgacggcctctaccaa
ttccaaactcggacggtgacgcctttttaccataataaagaagccattaagctggaattt
gaagcctggctgagaatgggccggtctttactgatttttatcgaagaagaagacaaggcc
cgcgacttagaaaaagacctcaaggcaatggactttcaggcggtcttgacccaggcagat
cagattatccctgaagccattaatattattgctggccagctgtcgggtggaattgaattt
gtggacagccaagtggttctcttagctcaaagtgacctctttgaccaggctaagcgccgc
cgtcgtaaaaataccaataacctctccaatgctgagcgcttgaagagctaccaagagtta
aaccccggcgactatgtggtccatgtaaaccacgggattggtcagttcgttggggtagag
actatcgaggtagcgggtaaccacaaggactatctcagtatcgtctatgccgataatgcc
tctattcacgtccccattgaccaaattgacttggtgcaaaaatatgtctcggcggaaggc
aagagccctaaactcaacaaaatgggcggaaccgaatggcaaaagaccaagcaaagggtc
agcaaaaaaatcgaagatattgctgatgacttggtggacttgtatgcagaaagggagacc
agaaagggctacgcctttagtcctgacaacgaagaccaagctgcctttgaagacgaattc
ccttatcctgaaaccgatgaccagctccgctcaatccaggaaattaaagctgacatggaa
aaagaaaagcccatggatcgtctcctcgtcggggacgtgggctttgggaagactgaagtt
gccatgcgggccgccttcaaggctatgcttgacggtaagcaagtcgccttcctggtgccg
acgactgtcttagcccagcaacactacgaaaccatgctagagcgctttaaggactatccc
tttactattgacttattgagtcgtttccggagcccggccgaacaaaagcatgtcattaag
ggtttaaaagagggcagtgttcaacttgtgattggtacccatcgactcctatccaaggat
attaagttcttagatctcggtttattggttgttgatgaggaacaacgctttggcgtcaag
gccaaggagaggttaaaggccttacggaaaaatgtcgatgtccttaccctaacggcaacg
ccgatccctcgtaccttgaacatgtccatgatgggggttagggacttgagtgtgattgaa
accccaccagctaaccgttttccggtacagacctatgtcatggaacaaaattatggagcg
atccgggatgccattgaacgtgaattagctcgcaatggtcaagtcttttacctctttaat
aatgtgcaaaatatccaagaaaaggccaactttattgaggaattagtcccccaagcccgg
gtagccattgcccatggccagatgcatgcgaatcaattagaggaagtcttaatggacttc
ctggctggagatgacgacgtcttagtcactaccaccattattgaaacggggattgatatg
ccaaatgtcaataccctcttagtggaggatgctgaccggatgggcttatcgaccctctat
caattacggggtcgggtaggccggtccaaccgggtagcctatgcttactttatgtaccgg
cctgacaaggccctcaatgaggccagcgaaaaacggctgaccgccctcaaagactttact
gaattaggggcagggttcaaaatcgccatgcgcgacctctccattcgtggagccggcaac
ctcttgggacaagaacagcacggttttgtcaattccgtgggttatgacctctttcaacag
atgctggatgaagccatccgtaagaaacaaggcaaggcagccaagcggcctcagtcaccg
acagaaattgaattgcacattgatgcctatattccttcagaatatatccaggatgaaaat
caaaaggtggaaatctacaaacgcatcaacctgttagaggatgttgatgccatgtgggac
ttggatgacgaattattggaccgctttggtgagcctccggtagaagtccaatggctctta
gcagtcggggcgatgaagtcctatgcgactgcaataggggtagagaaaatcacgcgtaag
gggaaggcgattgagctggtctttaccaagcaacaagaccctagccaattgactccgctc
attttccaagccttagaagatatccccatgaaactacaaatcaaaatggctaatgaccaa
ttagtcatgcagttaaacactaaagacctctcaactgatcagtggttagactatcttctc
caattcttaacccagctcagtaaggatttaaaggcggattctgaccaagcggaaggggag
gactag
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