KEGG   Aminobacter sp. MDW-2: H5P29_04670
Entry
H5P29_04670       CDS       T11718                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
amiw  Aminobacter sp. MDW-2
Pathway
amiw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amiw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    H5P29_04670 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:amiw03021]
    H5P29_04670 (rho)
   03019 Messenger RNA biogenesis [BR:amiw03019]
    H5P29_04670 (rho)
Transcription machinery [BR:amiw03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     H5P29_04670 (rho)
Messenger RNA biogenesis [BR:amiw03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     H5P29_04670 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 OB_RNB AAA_22 S1CSD-TOTE-2 NACHT DnaB_C ANAPC4_WD40
Other DBs
NCBI-ProteinID: QNH35218
LinkDB
Position
960305..961570
AA seq 421 aa
MQEMKLQDFKNKKPTDLIAFAESLEVENASVMRKQELMFAILKKLAAQDIEIIGDGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRSPKEGERYFALLKVN
TINFDDPEKIRHKIHFDNLTPLYPTSRLKMEVENPTTKDISPRVIDLVAPLGKGQRALIV
AQPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIYPA
MDILKSGTRKEDLLVQRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKTNADFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcaggaaatgaaactacaggatttcaagaacaagaagccgaccgacctgatcgcgttc
gctgagtcgcttgaagtcgaaaatgccagcgtcatgcgcaagcaggagctgatgttcgcg
atcctcaagaagttggcggcgcaggacatcgagatcattggcgacggcgtcgtcgaggtg
ctccaggacggcttcggcttcctgcggtcggccaacgccaattaccttccgggtccggac
gatatctacatctcgccctcgcagatccgccgcttctcgctgaagaccggcgatacggtc
gaaggcccgatccgcagccccaaggaaggcgagcgttatttcgcgctgctcaaggtcaac
accatcaatttcgacgatcccgaaaagatccgtcacaagattcatttcgacaatctgacg
ccgctgtacccgacctcgcggctcaagatggaagtcgaaaacccgaccaccaaggacatt
tcgccccgcgtcatcgacctggtggcgccactcggcaagggtcagcgcgccctgatcgtg
gcgcagccgcgtaccggcaagaccgtgctgctgcagaacattgcgcactcgatcaccacc
aatcatcccgaatgctatctgatcgtgcttctgatcgacgagcgtccggaagaagtgacc
gacatgcagcgctcggtgaagggcgaggtcgtgtcctcgaccttcgacgaaccggctgtc
cgtcacgtccaggtcgccgaaatggtcatcgagaaggccaagcgccttgtcgaacatggc
cgcgacgtcgtcatcctgctcgattcgatcacccgtctcggccgcgcctacaacaccgtc
gtgccgtcatccggcaaggttctgaccggtggtgtcgacgccaacgcgctgcagcggccg
aagcgcttcttcggtgccgcccgtaacattgaagagggtggttcgctgaccatcatcgcc
accgcgctgatcgataccggcagccgcatggacgaagtcatcttcgaagagttcaagggt
accggcaactcggaaatcgtgctcgaccgcaaggtcgccgacaagcgtatctatccggcg
atggacatcctcaagtcgggcacgcgcaaggaggacctgttggtccagcgtcaggatctg
cagaagattttcgtgctgcgccgcattctggcaccgatgggaacgaccgatgcaatcgag
ttcctcatcgacaagctcaagcagaccaagaccaatgccgatttcttcgattcgatgaat
acctga

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