Aminobacter sp. MDW-2: H5P29_18680
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Entry
H5P29_18680 CDS
T11718
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
amiw Aminobacter sp. MDW-2
Pathway
amiw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amiw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H5P29_18680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amiw03021
]
H5P29_18680
03400 DNA repair and recombination proteins [BR:
amiw03400
]
H5P29_18680
Enzymes [BR:
amiw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H5P29_18680
Transcription machinery [BR:
amiw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H5P29_18680
DNA repair and recombination proteins [BR:
amiw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H5P29_18680
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
QNH32561
LinkDB
All DBs
Position
3767360..3768370
Genome browser
AA seq
336 aa
AA seq
DB search
MIQKNWQELIKPNKIEFSSKKKTLTTLVAEPLERGFGLTLGNALRRVLLSSLRGAAVTAV
QIDGVLHEFSSIGGVREDVTDIVLNIKEIAIRMEGDGPKRMVVRKQGPGAVLAGDIQTVG
DVEILNPDHVICTLDEGAEIRMEFTVDTGKGYVPAERNRAEDAPIGLIPVDSLYSPVKKV
SYKVENTREGQVLDYDKLTMTIETDGSITGEDAVAFAARILQDQLALFVNFDEPQKEVAA
EAVTELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLN
EIKEVLAAMGLHLGMEVQDWPPENIEDLAKRYEDQY
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgatccagaaaaactggcaggaactgatcaagccaaacaagatcgagttctcgtccaag
aagaagacgctgaccacgctcgtcgccgaaccgcttgagcgtggcttcggcctgacgctg
ggcaacgcgctccgtcgcgtgctgttgtcgtcgcttcgcggcgctgccgtcactgccgtc
cagatcgacggcgtgctgcatgagttctcgtccatcggcggcgttcgtgaggacgtcacc
gatatcgtgctcaacatcaaggaaatcgccatccgcatggaaggcgacggcccgaagcgc
atggtcgttcgcaagcagggccccggtgccgtgctcgccggcgacatccagacggtcggc
gacgtcgagatcctgaaccccgaccacgtcatctgcacgctcgacgagggtgcggagatc
cgtatggagttcaccgtcgacaccggcaagggctacgtcccggctgaacgcaaccgcgca
gaagatgctccgatcggcctcatcccggtcgacagcctctactcgccggtcaagaaggtt
tcttacaaggtcgagaacacccgcgagggccaggttctggactacgacaagctgaccatg
accattgagaccgacggttcgatcaccggtgaggacgcggtggctttcgctgctcgcatc
ctgcaggaccagctcgccctgttcgtcaacttcgacgagccgcagaaggaagttgcagcc
gaggccgttaccgagcttgccttcaatccggcgctgctcaagaaggtcgacgaactggag
ctttcggtccgttcggccaactgtctgaagaacgacaacatcgtttacatcggcgacctg
atccagaagacggaagcagaaatgctgcgtactccgaatttcggccgcaagtcgctcaac
gagatcaaggaagttctggccgcgatgggcctgcacctcggtatggaagtgcaggactgg
ccgccggaaaacatcgaagacctcgccaagcgatacgaagaccagtactaa
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