Aminobacterium sp. MB27-C1: RBH88_01895
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Entry
RBH88_01895 CDS
T09908
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amiz
Aminobacterium sp. MB27-C1
Brite
KEGG Orthology (KO) [BR:
amiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amiz03016
]
RBH88_01895
Enzymes [BR:
amiz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RBH88_01895
Transfer RNA biogenesis [BR:
amiz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RBH88_01895
Prokaryotic type
tRNA splicing ligases
RBH88_01895
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WMI71873
LinkDB
All DBs
Position
407549..408943
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AA seq
464 aa
AA seq
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MKNMLKRVDSVRLILEKEALSGMMVPGLIFADHYIEKTLEQDSALQQVANVACLPGILGY
SFAMPDIHWGYGFPIGGVAAFEVDKGIISPGGVGYDISCGVRLLSSYIKLSDILPTLDSV
SSSLFSAVPSGVGATSTVKLSSRDLDAVLCKGAHWAVKEGYGIHSDLEHTEQNGCIEGAL
CEAVSSRAKERGKNQLGTLGSGNHFLEIQVVDEIYDKNAASRMNLEEGCITVMIHCGSRG
LGHQVCDDYLKVMRRAMSKYKINVPDRQLCCAPILSEEGQSYIGAMRAAANFALANRQII
GSAVRDVFAHFFPGRPLFTVYDVSHNMAHIEKHVWEKRKVEVCVHRKGATRSYEGQPVLI
PGSMGTASYVLVGTQKAEEETFASTCHGAGRVLSRSESMRRTKGMNLFEEMARRGVTVMA
DSPRTLGEEMPEAYKDISAVVEVVHKAQLSLKVARLRPIAVIKG
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatatgttaaagagagtggatagtgttcgtttgattttagagaaagaagcatta
tcaggaatgatggtgccgggattgatctttgctgatcactatatagaaaaaacattggaa
caagacagtgcattgcaacaggtagcaaatgtagcatgtttgcctgggattttaggttac
agtttcgctatgccagacattcattggggatatggatttcctataggcggagttgctgct
tttgaagtagataaaggcataatctcacctggaggagttggatatgacatatcctgtgga
gttcgcctcctttcctcttatattaaactatcagatattttacctactctagattcagta
tcttcttcccttttttcagcagtaccaagcggtgttggagcaacaagtacagtgaaatta
tcatcaagagatttagatgccgttctttgtaagggggctcattgggcggtcaaagaggga
tatggtatacatagcgacttggaacatacagagcaaaatggttgtattgaaggcgctctt
tgtgaggctgtttcttccagagcgaaagagcgaggtaaaaatcagcttggaacactggga
tctggtaaccattttcttgaaattcaggttgtagatgaaatctacgataaaaacgcagca
tcgcgcatgaatcttgaggaaggatgtataaccgtcatgattcattgtggaagtcgagga
cttggtcatcaagtttgcgatgattacctgaaagtcatgcgtagggctatgtctaaatat
aaaattaatgttcctgatcgacaactgtgctgtgctcctatactctctgaagaggggcaa
agctatattggagctatgagagctgctgcgaactttgctttggctaacaggcagattata
ggatcagcggtgcgagatgtttttgctcactttttcccaggaagacctctttttactgtc
tatgacgttagccataatatggctcatatagaaaaacatgtatgggagaaacggaaagta
gaagtatgtgtccatcgtaaaggggctacccgatcctatgaagggcaacctgtacttatt
cccggtagcatgggaactgccagttatgttttggtaggaactcaaaaagcagaggaagaa
acttttgcttctacatgtcatggagctggtcgtgtcttaagccggagcgagtcgatgcgc
cggacaaaaggtatgaatttgtttgaagagatggctcggcgaggtgtgacggtaatggca
gatagcccacgaacattaggggaggaaatgcccgaagcatataaggatatttccgctgtt
gtagaggttgtacataaagcccaactcagtttaaaggtggctcgtcttcgacctatagct
gtaataaaaggttaa
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