Aminobacterium sp. MB27-C1: RBH88_02030
Help
Entry
RBH88_02030 CDS
T09908
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
amiz
Aminobacterium sp. MB27-C1
Brite
KEGG Orthology (KO) [BR:
amiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amiz03032
]
RBH88_02030 (topA)
03400 DNA repair and recombination proteins [BR:
amiz03400
]
RBH88_02030 (topA)
Enzymes [BR:
amiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RBH88_02030 (topA)
DNA replication proteins [BR:
amiz03032
]
Prokaryotic type
DNA Topoisomerases
RBH88_02030 (topA)
DNA repair and recombination proteins [BR:
amiz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RBH88_02030 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DNA_ligase_ZBD
Auto_anti-p27
Toprim_4
DUF3268
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
WMI71897
UniProt:
A0AA51C7Y9
LinkDB
All DBs
Position
432435..434552
Genome browser
AA seq
705 aa
AA seq
DB search
MTKKETGKTLVVVESPTKAKTLSKILGSKYTVKASIGHIKDLPKSRIAIDIENNFQPEYI
LVKGKAKIKNELVKLAQGSQKILLASDPDREGEAIAWHLCDILKLDPESQCRVRFYEVTP
KAVKAAIKKPESVDMNRVDAQQARRVLDRLVGYSLSPLLWKKIRYGLSAGRVQSVALNLI
CDREREIKNFVPSEYWHVNVEALSNDNKRKYDLKVMSFENKSFWKEGKPLLISSSEQAEK
IASDIQSAALVVKEYKVKEGKRKPLPPFKTSTLQQEGARRLSFSPRRTMAVAQALFEGIN
IPGRGPAGLITYMRTDSLRIAPEALDATRNYITQSYSSEYLPKTANLFTSKARSQDAHEA
IRPTDVTLTPESLKSVLTPEQYKLYSLIWNRFVASQMAPAVVANAILDVEAGSYGLRQTG
ETLIFDGWGKLWPLELKGSELAPAVSEEELICHDISKEQRFTKPAARYSEATLIKTLEEK
GVGRPSTYATIVETLYDRGYVEKNEEKRLEPTSLGMTVDDFLLQYFDSKSPSPIVDTNFT
AQMEGQLDLIEENKLEWVDVVRSFWGGFAETLEEAKKASAVDLPEPEPIGEDCPECGKPL
VKKRGRFGDFIACSGYPECRYTRPILKTIGVKCPLCGETENGEVVRRRSKKGKFFYGCSR
YPECKYVSWNEPTGEKCPECGTPLVRKNKKSLPECPECGWKKEKK
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagaaagaaacggggaaaactcttgttgtagtcgaatctcccacaaaagcgaaa
actctttctaaaatattaggatcaaaatatacagtaaaagcgagcattggccacatcaaa
gaccttcctaaaagccggatcgctattgatatcgaaaacaactttcaaccagaatatatt
ctagttaaaggaaaagccaaaataaaaaatgaattagttaaacttgctcaagggagtcag
aaaatactactggcatctgaccctgatagggaaggggaggctattgcttggcatctttgc
gatattttgaaacttgatccagaatcgcaatgccgggtccgtttttacgaagttacgcca
aaggctgtcaaagcggcaattaaaaagcctgagtccgtagatatgaacagagtagatgcg
caacaagcacgtcgtgttcttgaccgtcttgtcggctattctttaagtccgctattgtgg
aaaaagatacgctatggcctttctgctgggcgagtgcaatctgtagctctcaatctgata
tgcgatagggaacgagaaataaaaaattttgttccttcggaatattggcatgtcaatgtg
gaagccttatcaaacgataataaaaggaaatatgatttaaaggttatgagctttgaaaat
aaatctttttggaaggaagggaagccccttcttatatcgagctcagaacaagcagaaaag
atcgccagcgatattcaatcagctgccttagttgtaaaagaatataaagtaaaagaaggt
aaaagaaaacctttacctccttttaaaacaagtacattacaacaggaaggtgcgcgtcgt
ttaagtttctctcctcgtagaacaatggctgttgcacaggcgctttttgaaggcattaat
attccagggcgaggtcctgccggccttattacatacatgcgaacagatagtctccggata
gcaccggaagcattagatgcgaccagaaattatattacccaaagttattcatcagaatat
cttcctaaaactgccaacctgtttacatctaaagccagaagtcaggatgctcatgaagca
attcgaccgacagatgtgacgttgacaccagaaagcttaaaaagtgtattaacacctgaa
caatacaagctgtattctcttatttggaaccgtttcgttgcttcgcaaatggctcccgcc
gttgttgccaatgctattcttgatgtggaagcgggttcttatggcttaaggcaaacagga
gagactttaatttttgatggatggggaaaattatggccattagagttaaaagggagcgaa
ttagctccagcagtttcagaagaagagctaatatgccatgatatttctaaagaacagcgt
tttacaaaacctgctgcgcgctactcagaagcgactcttataaaaactttagaagaaaaa
ggagttggacgaccttcaacctatgccactattgttgaaactctttacgacagaggatat
gttgaaaagaacgaagaaaaacggttggaacctacttctttgggaatgacagtagacgat
ttcttgcttcaatattttgactctaaaagcccttctcccatcgtcgatacgaattttacg
gctcaaatggaaggacaattggatcttattgaagaaaataagcttgaatgggttgatgta
gtccgttctttctggggtggttttgcagaaactctagaagaagccaaaaaagcatcggct
gttgatttgcctgaacctgagccaattggtgaggattgtccggaatgtgggaagccttta
gttaaaaaacgaggacgtttcggtgattttatagcctgttcgggatatcctgaatgtcga
tatactcgcccaattctgaaaactattggtgtgaagtgtcccctatgtggggaaactgaa
aatggagaagttgttcgaagaagaagtaaaaaaggaaagtttttctatggatgttcacga
tatcctgaatgtaaatatgtctcatggaacgaacctacaggagaaaagtgtccagagtgt
ggaactccacttgttcgcaaaaacaaaaaaagtcttccagaatgccccgaatgtggttgg
aaaaaggagaaaaagtaa
DBGET
integrated database retrieval system
