Aminobacterium sp. MB27-C1: RBH88_07185
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Entry
RBH88_07185 CDS
T09908
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amiz
Aminobacterium sp. MB27-C1
Pathway
amiz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amiz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RBH88_07185 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amiz03021
]
RBH88_07185 (rpoC)
03400 DNA repair and recombination proteins [BR:
amiz03400
]
RBH88_07185 (rpoC)
Enzymes [BR:
amiz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RBH88_07185 (rpoC)
Transcription machinery [BR:
amiz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RBH88_07185 (rpoC)
DNA repair and recombination proteins [BR:
amiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RBH88_07185 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WMI70645
UniProt:
A0AA51C7H7
LinkDB
All DBs
Position
complement(1470046..1475058)
Genome browser
AA seq
1670 aa
AA seq
DB search
MSQREIVGVRIKLASPERIRELSSGEVKKPETINYRTLRPEKDGLFCERIFGPTKSYECA
CGKYKRSGPKFKGIICDRCGVEVTDNRVRRERMGHIELAAPVVHIWYLRGIPSRLSLLLG
TSTKDLEKVVYFAPTRKREAAYKVVMEGRRPDLARRGDVISESEVRIHSHYDSKIKAEEA
YRIISVDEIPVNEGDVLSAQQVSRYKTEYGDSLFKVEPAFEFVSVPENLDFVPGDVISAS
EIERLQKLELNFDVKRAVVNNQETFVVTAAAKLPFTKGDVVSATEFQMFHEKYPGRFMAQ
VETVTIEDPCYIVIEKGSSPFNACDIIMEREEYLCAAYDKKFSAGIGAEGVRTLLQKTDL
DLLCATLREDVSESTGQKKRKLIKRLQVSEDFRKSKSQIDSMVLEVLPVIPPDLRPMVQL
DGGRFATSDLNDLYRRVINRNNRLRKLQELRAPEIIIRNEKRMLQESVDALIDNGRMGKA
VLGAGNRPLKSLTDLLRGKKGRFRQNLLGKRVDYSGRSVIVIGPQLKIYQCGLPKQMALE
LFKPFVIRQLVERGLAPNVKSAKRLIERGREEIWGILEDIIKDHPVLLNRAPTLHRLGIQ
AFEPVLMEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQAEARLLMLSANNLLSPAS
GRPIVTPTQDIILGIYYLTDLRDGLKGEGAYFSDIEDVLIALNHKVVHLNARIRLKKQME
WNIDNDDEHWFETSPGRVLFNSILPEKLRFINKQLGKKAIGKLIDDAYDVITRSEIVGML
DGIKSLGYHWSTVSGISFGVQSIIIPPEKKEITEKTVVEDDELKSEFEMGILTQEEYLYR
KEILWSDASRRISDNILDHMAHENPIRMMVDSGARGSKSQMGQMAGIRGLMSDPSGRIID
YPITANFREGMNMLEYFISTHGARKGLADTALRTAKSGYLTRRLVDVAQDIIVTHHDCGT
NKGVEIRPMLQDGKVMISLAERIAGRTSLYDLYHPETGEIVVEAGELITPKLAETIDKLG
FSSIWVRSPLTCTLKQGVCQKCYGMDLATRKEVAIGESVGVVAAQSIGEPGTQLTMRTFH
TGGVRMTGEDITQGLPRIEQLFEVRRPKKVSYLAGIDGRVQEIREMEGKRKVIITSDETG
KEEKVTYSIPSSQHLLVEEGQTVGKSDRLTEGNVDPQQLLEVEGIEEVQRSLVDEIQGVY
RSQGVSINNKHIEVILRKVAPVNRIRVVEEGDTSFVAGDLVWTDEIENENEAIQKENEKN
IMEATRIFSGRIVKNIVANRLNDAILQYQNKPLTEDAIRTLLRPGYLISQIVLEGDKGKD
LILVIGEAAFRKRMEGLELIEPFESQDGKEIVAGTILSPGHLGIITAGDPVSICVRDSEA
IEKLVDSAYLAEDICVGGDVMAEGDRIFTQEAAKVCLEHDIESLKLWHSVERISVLDALQ
ERLMNKIWGRPLTQAIDGEGNALTDVSQMVDARIIRGLVDAEIAAVDLEGEILTRDKVLL
ELLNDLAYGKVILEPVFDKKGEKLVDSGQEINRAMIDLLMRSNAEEFVVRPISARSDEKQ
LIWNVTFVRKLREGPKCKPFVHGITKAALATDSFLSAASFQQTAQVLAGAAVKGDIDPLQ
GLKENVIIGHLIPAGTGVEWFKDVDVVPADRSDKIDKSSVSSEKTSNIDE
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaagagaaatagtcggggtacgtattaagctggccagcccagaacggatcaga
gaattgtccagtggtgaagttaaaaagccagaaactattaactatagaacacttcgccct
gaaaaagatggacttttctgtgagcgtatctttggccccacaaaaagctatgaatgtgcc
tgtggcaaatacaagcgaagcggtccaaagtttaaaggtatcatttgtgaccgttgtggt
gtagaagttaccgataaccgtgttcgcagagagcgaatgggccatatcgagttggctgcg
cctgttgtgcatatttggtatctcagaggcattccgagccgcttgagccttcttttgggt
acaagcacaaaggatttggaaaaagttgtctattttgctccgacgcgtaaacgagaagcg
gcgtataaggtcgtcatggaaggacgacgtcctgatttagctcgacggggagatgttatt
tcagagagcgaagtacgcattcattcgcactacgattctaaaatcaaggctgaagaggca
tatcgcattatcagcgttgatgaaattcctgtgaatgagggcgatgttctttccgctcag
caggtttcaagatataagacagagtatggagatagtctcttcaaggtggagcctgctttt
gaatttgtatctgtccctgagaatcttgattttgttccaggagatgttatttctgcttca
gaaattgaacgtttgcagaaactggaacttaattttgatgttaaacgcgcagttgtcaat
aatcaggaaacttttgtagttactgcggcggcgaaattaccctttacaaagggtgatgtt
gtttcagctacggaattccaaatgttccatgaaaaatatcctggacgctttatggctcag
gtagagacggtaacaatagaggatccttgttatattgttatcgaaaagggatcgtctccc
tttaacgcctgcgatattattatggagcgggaagaatacttatgtgctgcctacgataag
aaattcagtgctggtataggtgcagagggtgttcgtacacttttacagaaaactgattta
gatcttctttgtgcaactttacgagaagatgtttctgagagtacagggcagaaaaagaga
aagcttattaaaagacttcaggtttctgaagattttagaaaaagtaagtcccagatagat
tccatggttttggaagttctgcctgttattccaccagatcttcgtcctatggtgcaactt
gatgggggtcgtttcgccacgtctgatttgaatgatctttatagacgtgtaattaataga
aacaatcgtcttagaaagttgcaggagttgcgggctccagaaattattattcgcaatgag
aaaagaatgttgcaggagtcagtcgatgctctcattgacaatggtcgcatggggaaagct
gttttaggagctggaaatcgtccattgaaaagtttgacagacttgttaagaggtaaaaaa
ggtcgtttccgtcaaaacttgttgggtaaacgtgtcgactattcagggcgatccgttatt
gttattggtcctcaactgaagatatatcagtgtggattgccaaagcagatggctcttgag
cttttcaagcctttcgtaatacgacagcttgttgagcgtggattggcacctaatgttaag
agtgcaaaacgtcttattgaacgaggtcgagaggagatttgggggattcttgaagatatt
attaaagatcaccctgtattgttgaatcgagctccgacactccatagattgggcatccag
gcttttgagccagtcttgatggaaggaaaggcaatacgtttgcacccattagtttgtacg
gctttcaacgcagacttcgatggagaccagatggctgttcacgtgcctctttctcttgaa
gcgcaggcagaagcacgacttcttatgttatctgccaataacttgctttcacctgctagt
ggcagacctatagtaactccgacacaggacattattcttggtatttattacctgactgat
ttacgcgacggattaaaaggtgaaggcgcgtatttctcagatattgaagatgtactcatt
gctttgaaccataaggtggttcatttaaatgctcgcattcgtttgaagaaacagatggag
tggaatatcgacaacgatgacgaacattggtttgaaacttctccagggcgggttcttttc
aatagtattcttcctgagaagttgcgttttattaataaacagcttggcaagaaggctata
ggtaagctgatcgatgatgcatatgatgtcattactcgaagtgaaattgtagggatgctc
gatggcataaagtcgttaggctaccattggtctactgttagcggcattagttttggagtt
cagtctatcatcattcctcctgaaaagaaggaaataacagaaaaaactgttgttgaagat
gacgaattaaagtcagaattcgaaatgggcatattgacgcaggaggagtacctttaccga
aaggaaatactgtggtctgatgcgtcacgtagaatttccgataatattcttgaccatatg
gcccatgaaaatccgattcgcatgatggttgattccggtgcgcgaggaagtaagagtcag
atgggacagatggcaggtattcgaggcttgatgtctgacccgtcaggacgaattatcgac
tatcctattactgcaaacttccgtgagggaatgaatatgttggaatacttcatttctacc
cacggagcgcgaaaaggtttggccgatactgcccttcgtactgctaagtctggttattta
actcgtcgtcttgtagatgttgctcaagatatcattgttacgcaccatgattgtggcaca
aataagggtgtagaaatcaggcctatgcttcaagacggtaaggttatgatctctcttgct
gaacgtatcgcaggcagaacatcactttatgatctctaccatcctgaaacgggggaaatt
gtagtcgaggctggagagcttataacacctaaactagcagagactatagataaacttggt
ttctcctctatttgggtacggagtccattgacgtgtaccctcaaacagggtgtgtgccag
aaatgttatggtatggaccttgctacgcgaaaagaagttgccattggagaatcggttgga
gtagttgcagcccagtccataggcgaaccgggaacacagcttacaatgcggaccttccac
acaggaggcgttcgtatgacgggtgaagacattactcagggtcttcctcgaatagagcag
cttttcgaagtccgtcgtcctaaaaaagtttcttaccttgccggaattgatggccgggtg
caagaaatacgtgagatggaaggcaaaagaaaagttattattacttcagatgaaacaggc
aaggaagagaaggttacatacagtatcccttcatctcagcatttgcttgtagaagaaggt
cagacagttggaaagagcgatcgtcttaccgaagggaatgttgatcctcaacaacttctt
gaagtggaaggtatagaagaggttcagcgcagtcttgttgacgaaatacagggtgtttac
cgttctcagggtgtttctataaacaacaagcacatcgaagttatacttcggaaggttgca
ccagttaaccgtattagagttgttgaagaaggggatacatcctttgtcgcaggtgattta
gtctggacagatgaaatagaaaatgagaatgaagccatccagaaagaaaacgagaaaaat
attatggaggctacacgtattttctcagggcgtatagttaaaaatatagtggcaaatcgt
ttgaatgatgcgattcttcaatatcaaaacaagccacttacagaagatgctatccgtacc
cttcttcgaccgggttatctcatctcccagattgttttagagggcgataaaggaaaagat
ctcatccttgttataggggaagccgcttttagaaaaagaatggaaggacttgaacttata
gaacctttcgaatctcaggatggcaaagagatcgtagctggaacgattttaagtcctgga
catttggggattattacagctggggaccccgtctcaatctgtgttcgagacagtgaggcc
atagagaagcttgtcgatagtgcctatttagcagaagatatttgtgttggcggtgacgtt
atggctgaaggagaccgtatctttacgcaggaagctgccaaagtatgtcttgaacacgat
atcgaatctctgaaattatggcactctgttgaacgtatttcagtacttgatgcattgcaa
gaacgtctcatgaataaaatttggggacgtcctttgactcaggccatagacggagaaggc
aatgctttgactgatgtgtctcaaatggttgatgctcgaattatacgtggtctcgtcgat
gctgaaattgcagcagtagatcttgaaggtgagatcctaacgagggataaagttttactt
gagctgttaaatgatctggcgtatggaaaagtgattttagagcctgtttttgataaaaag
ggagaaaaattggtagatagcggacaagagattaaccgtgctatgattgatcttcttatg
agatccaatgcggaagaatttgttgttcgaccaatttcggctcgctcagatgaaaaacag
ctcatatggaatgtcactttcgtgcgcaaactgagagaaggaccgaaatgcaaaccgttc
gttcatggaattaccaaggctgctttagccaccgatagtttcttgagcgccgcttccttc
cagcagacagctcaggttttggcaggagctgctgtaaagggagacatagatccgctgcag
ggattgaaggaaaatgtcatcattggacatttaattcctgcagggactggagttgaatgg
tttaaagatgtagatgtcgttcccgcagatcgaagtgataaaatagataaatcttcagtt
tcatcagaaaaaacatctaatatagatgaataa
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