Aminobacterium sp. MB27-C1: RBH88_08745
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Entry
RBH88_08745 CDS
T09908
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
amiz
Aminobacterium sp. MB27-C1
Pathway
amiz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
amiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
RBH88_08745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amiz03019
]
RBH88_08745
03009 Ribosome biogenesis [BR:
amiz03009
]
RBH88_08745
04131 Membrane trafficking [BR:
amiz04131
]
RBH88_08745
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amiz04147
]
RBH88_08745
Messenger RNA biogenesis [BR:
amiz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
RBH88_08745
Ribosome biogenesis [BR:
amiz03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
RBH88_08745
Membrane trafficking [BR:
amiz04131
]
SNARE
SNARE associated proteins
Others
RBH88_08745
Autophagy
Aggrephagy
Other aggrephagy associated proteins
RBH88_08745
Exosome [BR:
amiz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RBH88_08745
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
AAA_16
RuvB_N
AAA_22
AAA_5
CDC48_2
TIP49
AAA_33
AAA_14
AAA_28
AAA_2
TsaE
AAA_25
AAA_7
RNA_helicase
nSTAND_NTPase5
AAA_lid_PRS2_C
nSTAND3
DUF815
Sigma54_activat
IstB_IS21
AAA_18
Parvo_NS1
Mg_chelatase
ABC_tran
AAA_24
NPHP3_N
DUF5906
NB-ARC
AAA_17
Rad17
AAA_3
Sigma54_activ_2
AAA_29
Zeta_toxin
nSTAND6
SLFN-g3_helicase
Molydop_binding
Vps4_C
Motif
Other DBs
NCBI-ProteinID:
WMI70943
LinkDB
All DBs
Position
1798712..1800832
Genome browser
AA seq
706 aa
AA seq
DB search
MPLRVKEALSKDVGRCIARIDPEDIKRYGLSEGQIIEIAGKRKTPARVLACDSGDMGQKT
IQIDGITRENARVGLDEKISIRKTDHHFAGSITLRPLTSTPLLEKERDSVYLSSLLEGLP
VVEGDRIRTNLYGTRTCDFLVVDTTPKNIVLISSATYINVEKQMTKEQKATRISYEDIGG
LGPQIQRVREMIELPLRFPQVFDRLGVQPPKGVLLYGPPGTGKTVIARAVANETDVYFTH
ISGPEIIGKFYGESEERLRNVFDEAQAHAPAIIFIDEIDAIAPKREEMGGEKQVERRVVA
QLLALMDGLESRGQVIVIGATNIPNTLDPALRRPGRFDREISVPIPDRNGRFEILQIHTR
GMPLAEDVDLMRLAEITHGFVGADIEALAKEAAMSSLRRILPSIDYEKADIPYDELLSMN
VSMGNFLDALKEVEPSAIREVFVEVPDVTWNDIGGLESIKQELIEAVQWPLEHSNVYEKF
GITPPQGILLYGPSGTGKTLLVRALAHESGVNFIPVKGPALMSKYVGESERAIREVFKKA
KQASPSILYFDEIESLVPIRGRDSGSGASFTERVISQFLAEMSGIEELKGVTVLATTNRI
DLIDPALLSSGRFDVVLELPMPDAKARLEIFQIHLQKKPLAEDIHIEDLVSVTEGRSGGD
IDFICRKASALAIRDYLKNGKSDIPRIEKEHFETALSFLKSNLQKG
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgccactacgagtcaaagaagctctatcgaaagatgtgggaaggtgtattgcacgaata
gacccagaagatattaaaagatatggactgtctgaaggtcaaatcatagaaattgcaggc
aaaagaaagactccagccagagtattggcttgcgattctggcgatatgggacaaaaaacg
atacaaatcgatggaataacccgagaaaacgctcgcgtaggtctcgacgaaaagatttct
atacggaagactgaccatcactttgcgggcagcattactctccgccctctgacgtctacc
cctcttctcgaaaaagaacgggattccgtctatcttagttctcttcttgaaggtctgcct
gttgtagaaggagatcgcatacgaaccaacctttacggtacgaggacatgtgattttctt
gttgttgacactacgcctaagaatattgttcttatcagcagtgctacctatataaacgtt
gaaaaacaaatgacaaaagaacaaaaagctacacgtatctcttatgaagacatcggcggt
cttgggcctcaaatacagcgcgttcgagaaatgattgagcttcccctgcgttttcctcaa
gtttttgacagactcggcgttcaaccacccaaaggagtacttttatatggcccgccagga
acaggtaaaactgttattgccagagctgtcgcaaacgaaacagatgtatatttcactcat
atttcagggcctgaaattataggaaaattttatggagaaagcgaagagcgccttcgtaat
gtctttgatgaagcacaggcacatgctccagctattatttttatagatgaaatagatgca
attgctcccaaacgagaagaaatgggcggggaaaagcaggtggaacgacgtgtcgttgcg
caacttctcgctctgatggacggacttgaatctagaggacaagttatcgttataggtgcc
accaatattcccaacactttagatccagcacttcgtcgtcccggacgattcgacagggaa
atttctgttcctattcccgaccgcaatggacgttttgaaattttacaaattcatacacgg
ggaatgccgttggcagaagacgttgatttaatgcgtctcgccgaaattacccacggtttc
gtaggtgcagatattgaagcattggccaaagaagcagccatgtcttcccttagacgtatt
cttcccagtatcgattatgaaaaagccgatattccttacgatgaactcctttcaatgaat
gtctctatggggaattttcttgacgcattgaaagaggtcgaaccatctgcaatacgcgaa
gtatttgttgaggtacctgacgtaacatggaatgatattggaggacttgaatcaataaag
caagagcttatagaagctgttcaatggcctcttgaacacagtaatgtttatgaaaaattt
ggaataactccaccacaaggtatcttgttatacggaccttccggaacaggaaagacgttg
cttgttcgcgcattggcacacgaaagcggcgttaacttcattcctgtaaaaggtcctgcc
cttatgtctaaatatgttggagaaagtgaaagagccattcgtgaagtcttcaaaaaagct
aagcaagcttctccttctattctttatttcgacgaaatagaatccctcgttcctattcgt
ggacgagatagtggatctggggccagcttcacagagcgtgtcataagtcagtttctcgca
gaaatgagtggaattgaagagcttaagggagtgacagtcctggcaacaaccaacagaata
gatcttattgatcccgctcttctgagcagcggtcgatttgatgttgttcttgaacttccc
atgcctgatgcaaaagctcgacttgagattttccagatacatttgcagaaaaagcctcta
gcggaagacattcatatcgaagatctggtctctgtcacagaaggtcgaagcggtggcgat
atagattttatatgtcgaaaagcatcagctctcgctattcgagactatcttaaaaatggg
aaaagcgatattcctcgtattgagaaagaacattttgaaacagccttatcctttttaaaa
agcaatcttcaaaaaggataa
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