Aminobacterium sp. MB27-C1: RBH88_08845
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Entry
RBH88_08845 CDS
T09908
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
amiz
Aminobacterium sp. MB27-C1
Pathway
amiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBH88_08845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amiz03019
]
RBH88_08845
03009 Ribosome biogenesis [BR:
amiz03009
]
RBH88_08845
Enzymes [BR:
amiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBH88_08845
Messenger RNA biogenesis [BR:
amiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBH88_08845
Ribosome biogenesis [BR:
amiz03009
]
Prokaryotic type
rRNA helicases
RBH88_08845
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Flavi_DEAD
SNF2-rel_dom
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WMI70962
UniProt:
A0AA51C5V5
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All DBs
Position
1827802..1829472
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AA seq
556 aa
AA seq
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MKQNNFEQYELRPELLKALSERGFSSPTPVQDRVLSENIWEKDVLVRAETGSGKTLAFLL
PLLQRVTPGDRKSKTLILSPTRELSQQIWKEADWLGRYLNISTASLVGGMDMSRQIRSLR
DGSCVVTGTPGRVLDHIRRGTLDTSGIETVVLDEGDHMLDLGFKEELEAILDSFPDRKQI
WLFSATMPAEIKNLTKRYLTTPLFIALNKEGEANEDIVHEVYLVPSRHKEEGLVNTLLWE
KPTRGILFCHTRAETVELARKLHDENFQAVCLHGEMSQRERNMALSQFRSGRVPLLVATN
VAARGLDIQGVSHVIQMGLPDNRETFVHRSGRTGRAGHEGRDLLVLSPKEAAAFKSMVRT
SNISITWKNVPDPKDIRKKQRILYEEKIFAAEHYETQENLEWADSLLECHESRALASRLL
GLLFSRKNAGYELSADLDQEMKQGRTSRRNRKKESFGSGHSHKTVIRIERGTDHGWDVGK
ILRVICSTLNINKSGVGAIRLKNDHAHVELLPAAEKDFERLGNRLIERGLLAEEKKPQRK
SSEKWGHKAPRQRKKR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaacaactttgagcaatacgaacttcggccagaacttcttaaagccctttca
gagagaggtttttcttctccaaccccagtgcaggaccgagttctttctgaaaatatctgg
gagaaagatgttcttgtcagagcagaaacaggttctggtaaaacattggcgtttcttctc
cctttactacagagagttacccctggtgatagaaaatcaaaaacgttaatactctcacct
acccgagagctctctcaacaaatatggaaagaagccgattggctcgggagatatcttaat
atctctacagcatctctcgtcggtggaatggacatgtcaaggcaaattcgttctctgcga
gatggttcttgcgtagtaacgggaacgcctggacgagttttagaccatatcagaagagga
actctcgacacgtcaggaatagagactgttgttcttgatgaaggagaccatatgcttgat
ctcggcttcaaagaggaactagaagccattcttgatagttttccagatcgaaagcaaata
tggcttttttctgcaactatgcctgcagaaatcaagaaccttacaaaaagataccttaca
actcctctctttatcgctttgaataaagagggcgaggccaatgaggacattgttcatgaa
gtatacctggtgccatctcgccacaaagaagaagggcttgtcaatacccttttgtgggaa
aaaccaacgaggggaattcttttctgccatacacgtgcggaaacagtagaactggcacga
aaacttcatgatgagaattttcaggctgtctgccttcatggtgaaatgagccagagggaa
agaaatatggctctttctcaatttagaagtggacgtgttcctcttcttgttgctacaaac
gtagctgctcgagggctggatattcagggagtttctcacgttattcagatgggcttgccc
gataacagagaaacatttgtacatagaagcggaagaacaggacgagctggtcatgaagga
cgagatctacttgtactttctcccaaagaagccgcagccttcaagagtatggtacgaact
tcgaatatctccataacatggaaaaatgttcccgaccccaaggatatccgtaagaaacaa
cgtattctttatgaagaaaaaatttttgctgctgaacattatgaaacacaggagaatctc
gagtgggcagactctcttctcgagtgtcacgaaagtcgtgctctagcttcgcggctactt
ggccttcttttttctcgtaaaaatgctggctatgaactctcagcagaccttgatcaagaa
atgaaacaaggacggacatctagaagaaacaggaaaaaagaaagctttggctctggtcac
tctcataaaaccgtcatacgaatagagagaggcactgatcacggttgggatgtagggaaa
atattaagagtcatatgctcaactttgaacattaataagtccggagttggcgctattcgc
cttaaaaatgatcatgcccatgtagaactgttaccagcagcagaaaaagactttgaacga
ttgggaaatcgccttatcgagcgaggtttacttgccgaagaaaagaaaccacaacgtaaa
tccagtgagaaatggggacataaggccccaagacaacgtaaaaaacgatag
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