Alligator mississippiensis (American alligator): 102557938
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Entry
102557938 CDS
T03087
Symbol
SKIV2L2
Name
(RefSeq) Ski2 like RNA helicase 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102557938 (SKIV2L2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102557938 (SKIV2L2)
03041 Spliceosome [BR:
amj03041
]
102557938 (SKIV2L2)
03009 Ribosome biogenesis [BR:
amj03009
]
102557938 (SKIV2L2)
03016 Transfer RNA biogenesis [BR:
amj03016
]
102557938 (SKIV2L2)
Enzymes [BR:
amj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102557938 (SKIV2L2)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102557938 (SKIV2L2)
Spliceosome [BR:
amj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102557938 (SKIV2L2)
Complex C
U4/U6.U5 tri-SnRNP related factors
102557938 (SKIV2L2)
Ribosome biogenesis [BR:
amj03009
]
Eukaryotic type
Pre-60S particles
Helicases
102557938 (SKIV2L2)
Transfer RNA biogenesis [BR:
amj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102557938 (SKIV2L2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
102557938
NCBI-ProteinID:
XP_006267367
UniProt:
A0A151MXE9
LinkDB
All DBs
Position
Un
AA seq
1033 aa
AA seq
DB search
MADAFGDELFSVFEEEAAAPSGAKRARTGAAEPTGKAGKRANAKSPAAPAGKTKREAEVD
STEDAVFAKKVKLEDGAAEEVNLADLMPKVKVQAVETVEGCTHEVALPADEDFVGLKPRS
GKAAKEYPFILDSFQREAILCVDNKQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTS
PIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWV
IFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYT
DYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTK
GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAID
CLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGI
NMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTVGK
QLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLE
DQYNNIEIPNEDSVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEDDDF
GWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPGEKGEMQVV
PVLVHLLAAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQG
LKKVIQKIEAFEHRMYSHPLHNDPNLETVYKLCERKAQIAVDIKAAKRELKKARTVLQMD
ELKCRKRVLRRLGFATSSDVIELKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALL
SCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDIDEENYLNSFRPNLMDV
VHTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITK
IKRDIVFAASLYL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcgtttggggatgagctgttcagtgtcttcgaggaggaggcggccgcgccc
tcgggcgccaagagagccaggacgggggctgctgagcccaccggcaaggctgggaaacgc
gccaatgccaaatctccagcagccccggccggaaaaaccaagagagaggcagaggtggac
agtaccgaggatgctgtgtttgcaaagaaagtcaagctggaggatggcgcggcggaggag
gtgaatcttgcagatctgatgccgaaagtaaaggtacaagctgtggaaactgttgaaggt
tgcacacatgaggttgcacttcctgcagatgaagactttgtaggcctaaagccgagaagt
ggaaaagctgcaaaggaatatcccttcattcttgattcttttcaaagagaagctatcctt
tgtgtggataacaaacagtctgtgttagtgtcagctcatacatcagctggcaaaacggtg
tgtgcagagtatgccattgccttggctttgagggagaaacagcgtgtcatatttaccagt
cctattaaagctctgagtaaccaaaagtatcgtgagatgtatgaagaatttcaagatgtt
ggtctaatgacaggagatgtcactattaatcctacagcttcttgtcttgtaatgacaaca
gagattttgagaagtatgctgtacaggggttcggaggttatgcgagaagttgcctgggtt
atatttgatgaaatccattatatgagagactcagaacgtggtgtggtttgggaggagacc
attattttgctccctgacaatgttcactatgtgtttttgtctgccactattccaaatgcc
cgccagtttgctgaatggatctgccatcttcacaaacagccttgtcatgtgatttacaca
gattatcgacctacacctctgcagcattatatctttccagcagggggcgatggactccac
ctagtggttgatgaaaatggggatttcagagaagataattttaatacagcaatgcaggta
ttaagagatgctggtgatttggcaaaaggggatcagaaggggaggaaaggaggaacaaaa
ggaccatccaatgtgtttaagattgtgaagatgatcatggaaaggaattttcaacctgta
attatattcagtttcagcaagaaagattgtgaagcctatgcccttcaaatgacaaaacta
gacttcaatacagatgaagaaaagaagatggttgaagaagtatttaataatgcaatcgac
tgtttgtctgatgaggacaaaaagcttcctcaggttgagcatgtgcttccacttctaaag
agaggaattggtatccatcatggtggcttgcttcctattttaaaagaaactatagaaatt
cttttttctgaaggattgataaaggccttatttgcaactgagacttttgctatgggaatt
aacatgccagccaggacagtgttgttcacgagcgctcgtaaattcgatgggaaagatttc
cgatggatctcctcaggcgaatacatccagatgtcgggtcgtgcagggcgtcgaggtatg
gatgacagaggtatagtaattcttatggtggatgagaagatgagtccaacagtcggcaaa
cagcttcttaagggttcagcggatcctctaaacagtgcttttcatttgacgtacaacatg
gtattgaacttgctgcgagtagaggagattaaccctgaatacatgttagaaaaatccttt
tatcaatttcaacactacagagctattccaggagtagtagagaaggtgaataagttggaa
gatcagtacaacaacattgaaattccaaatgaggacagtgtggtcatctattataaaatc
cgacagcagcttgctaaacttggtaaagagattgaagaatatattcacaagccaaagtac
tgtttgccgtttttacagcccggaaggctggtaaaggtaaaaaatgaagatgacgacttt
ggttggggagtggttgttaacttctcgaagaaatcaaatgttaagccaaattctggtgaa
ctggacccgttgtatgtggttgaagtcctgctacactgcagcaaagagagtttgaaaaat
tctgctactgaggctgcaaagccagcaaaacctggtgagaaaggagagatgcaggttgtt
cctgttttggtgcatcttctcgcagctatcagcagtgtccgactttacatacccaaagat
ctgagacctattgataatagacaaagtgtgttgaaatctatacaggaagttcaaaagcgg
ttccctgatggggtaccattgctagatcctattgacgacatgggtattaaagatcaaggg
ctgaagaaggtcatccaaaaaatagaagcatttgagcataggatgtattcacacccactt
cataatgatcccaatttggagacagtttataagctttgtgaaagaaaagcccagattgct
gtggatattaaagcagcaaagcgagaactgaagaaagccagaactgtcttacaaatggat
gaactcaaatgccgcaaacgtgttttgagaaggttgggttttgccacgtcctctgatgtc
atagagttgaaaggaagggttgcttgtgaaatcagcagtgctgatgaactgctcctgaca
gaaatgatgtttaatgggctcttcaatgacttatctgcagaacaggcaactgcattacta
agctgttttgtattccaggaaaactccagtgaaatgcccaaattgactgaacagttggca
ggaccacttcgccaaatgcaggaatgtgctaaaagaattgccaaagtttctgcagaagca
aaattggatattgatgaagaaaattaccttaactccttcagacccaacctaatggatgta
gtacacacatgggcaaatggagctaattttgctcacatttgtaaaatgaccgatgtcttt
gaaggtagcataattcgttgtatgaggcgactagaagaattgcttcgacagatgtgtcaa
gcagcaaaagccattggaaatacagagctggaaaataagtttgcagaaggaattacaaaa
atcaagagagacattgtgtttgctgcgagcctttacctctga
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integrated database retrieval system
