Alligator mississippiensis (American alligator): 102558052
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Entry
102558052 CDS
T03087
Symbol
NFKB1
Name
(RefSeq) nuclear factor kappa B subunit 1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04010
MAPK signaling pathway
amj04210
Apoptosis
amj04218
Cellular senescence
amj04620
Toll-like receptor signaling pathway
amj04621
NOD-like receptor signaling pathway
amj04622
RIG-I-like receptor signaling pathway
amj04623
Cytosolic DNA-sensing pathway
amj04625
C-type lectin receptor signaling pathway
amj04920
Adipocytokine signaling pathway
amj05132
Salmonella infection
amj05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
102558052 (NFKB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amj03000
]
102558052 (NFKB1)
Transcription factors [BR:
amj03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
102558052 (NFKB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
Ank_2
RHD_dimer
Ank
Ank_4
Ank_3
Ank_5
Death
DMP19
Motif
Other DBs
NCBI-GeneID:
102558052
NCBI-ProteinID:
XP_006272783
LinkDB
All DBs
Position
Un
AA seq
978 aa
AA seq
DB search
MAEDPYIMGVSDPQMFTVDQFMGMNAIFNNSGYITSDIPLRADGPYLQIIEQPKQRGFRF
RYVCEGPSHGGLPGASSEKNKKSYPQVRICNYVGPAKVIVQLVTSGKSVHLHAHSLVGKY
CEDGVCTVNAGPKDMVVGFANLGILHVTKKKVFETLETRMIDACKKGYNPGLLVHSELNY
LQVEGCGERQLSDREKEIIRQAAFQQTKEMDLSVVRLMFTAFLPDSNGCFTRRLDPVISD
PIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEDENGGMWEGF
GDFSPTDVHRQFAIVFKTPKYRDVNITKPASVFVQLRRKSDLETSEPKPFLYYPEVKDKE
EVQRKRQKLMPNFSDSYGGGSGAGGGGGGMYGGGGGGAGSGFGYPSYGYTAFGGMHFHPG
TTKSNTGMKHGLSSDGHEQDRESCNKHSDKQNVKHGGKKEISGRDDSRLCGNNEEEDATL
SHTAQTDEANSRLQDGVFLEKAMQLAKRHANALFDYAVTGDVKMLLAVQRHLTAVQDDNG
DNVLHLAIIHLHAELVGNLLEVMQDLNSDDIINMRNDLYQTPLHLAVITKQADVVEDLLK
AGADVSSLDRHGNSVLHLAAQEGDDNILGILLKHKKTSLMINLSDGEGLSAIHMAVLANS
MSCLRLLIAAGADINAQEQKSGRTALHLAVEQENISLAGCLLLEGDAYVDSTTYDGTTPL
HIAAGRGSTKLTALLKAAGADPHVENFEPLFDPEDVKGNDDEDEGIVPGTTPLDMATSWE
VYDILNGKPYESKVASDDLLAPGDMKELNEDSKMQLYKLLEVPDPNKNWSTLAQNLGLGI
LNNAFRLSPAPSKTLLDNYEVSGGTVKELVDALKQMGYTEAIEIIQKARSVPLTECSQEN
FTSKAPPLSPFVPSTKQQTGELYDIKFQDTESMCDSGVETSFRKLSFTCSESLNSKSSIT
LSKMALGYGQEHSIQGKI
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagatccctatatcatgggagtgtctgatcctcaaatgtttacagtggatcaa
ttcatgggaatgaatgcaatatttaataattcaggttacattacttcagacataccacta
cgagcagatggaccatacttacaaatcatagaacagcctaaacagaggggatttcgtttc
cgatatgtatgtgaagggccatcacacggtggacttcctggggcttctagtgaaaagaac
aaaaaatcgtaccctcaagtcaggatctgcaattatgttgggcctgcaaaagtaatcgtt
cagttagtcaccagtgggaagtctgtccacttgcatgcacacagtctggtgggtaaatac
tgtgaagatggagtatgcacagttaatgcaggaccaaaggatatggtggtagggtttgca
aaccttggaatacttcacgtcaccaagaagaaagtatttgaaactctagaaacacgcatg
atagatgcctgtaaaaaaggatataatcccggactcttggtgcattctgaacttaattat
ctccaagtagaaggatgtggagaaagacaattatcagatcgggaaaaagaaatcattcgc
caggcagcatttcagcagacaaaagagatggatctcagcgtggtgcgccttatgttcaca
gccttcctccctgacagcaatggctgcttcacaagaagacttgatcctgtcatatcagat
cccatatatgacagcaaagcccccaatgcatccaatttaaagattgtaagaatggacaga
acagcaggatgtgtgacaggaggagaagaaatttaccttctctgtgataaggttcaaaaa
gatgacattcaaattcgtttttatgaggaggatgaaaatggtggaatgtgggaaggtttt
ggagatttttctcctacagatgtacatagacagtttgctattgtgttcaaaacccccaag
tacagagatgtcaatatcacaaaaccagcatctgtatttgttcaactgcggcggaaatct
gatctggaaacaagtgaaccaaagccttttctgtactatccagaagtcaaagacaaagaa
gaagtgcagaggaagcgacagaagctgatgcctaacttttctgacagctatggtggaggc
agtggtgcaggaggtggcgggggtggaatgtatggcggtggaggaggtggtgctggctca
gggtttggttacccttcatatgggtatactgctttcggaggaatgcatttccaccctggt
acaacaaaatcgaatactggaatgaaacatgggctttcaagtgatggacatgaacaagac
agggaaagctgcaataagcacagtgacaagcagaatgtgaagcatggtgggaaaaaggag
atctcaggcagggatgactcccgactctgtggtaataacgaggaggaggatgctactttg
tcacatacagctcaaacagatgaagccaactctaggttacaagatggagtgttcctggag
aaggccatgcagctcgctaaacgtcatgccaatgctctttttgactatgctgtaactgga
gatgtgaagatgttactagctgttcagcgccatctcactgctgtccaggatgataatggt
gacaatgtacttcatttagcaattatccaccttcacgctgagctggtgggaaacctctta
gaagtgatgcaggatttgaattctgatgacatcatcaatatgagaaatgatctttatcag
acccccttgcacttggcagttatcacaaaacaggcagatgtggtggaagatctgctgaag
gctggggctgatgtcagttctctggatcgacatgggaactctgtcttgcatttagcggcc
caggagggagatgacaacattttgggcatactccttaagcacaagaaaacctctctgatg
atcaacctttcagatggagaaggtctcagtgcaattcacatggcagtgctagcaaatagc
atgtcttgcctcaggctgctgattgctgctggagctgacatcaacgctcaggagcaaaaa
tctggacgaactgcattgcatctggctgttgaacaagagaacatctctttggcaggctgc
cttctgcttgagggcgacgcatatgttgacagcactacatatgatggaaccactccactc
catatagcagctggaaggggctccacaaaactgacagctcttctcaaagcagcaggtgca
gatcctcatgttgagaactttgagccattgtttgatccagaggatgtgaaaggcaatgat
gatgaagatgaaggaattgtacctggaacaacacctttggacatggccaccagctgggag
gtgtatgacatattaaatggcaaaccctatgaatcaaaggtggcttctgatgacctacta
gcaccaggagatatgaaagagctgaatgaagactccaagatgcagctgtacaagttatta
gaagtacctgacccaaacaaaaactggtctaccctggcacaaaacctgggtcttggaata
ctcaataatgctttcagattgagtcctgcaccatcaaaaactctgctagataactatgag
gtttctggtggtacagtaaaggagttagtcgatgccttgaagcaaatgggttacacagaa
gcaattgaaatcattcagaaagcacgatccgtcccactaactgagtgcagccaggagaat
tttacctccaaggctccaccactatcaccatttgttccatccactaaacaacagacaggt
gaactttatgatatcaaattccaagacactgaaagcatgtgtgatagtggagtggagact
tccttccgcaaacttagctttacttgttccgagtccctgaacagcaagtcatcaataaca
cttagcaaaatggccttgggctacggccaagaacactcgatacaaggcaaaatctaa
DBGET
integrated database retrieval system
