Alligator mississippiensis (American alligator): 102558085
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Entry
102558085 CDS
T03087
Symbol
COL4A6
Name
(RefSeq) collagen type IV alpha 6 chain
KO
K06237
collagen type IV alpha
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04510
Focal adhesion
amj04512
ECM-receptor interaction
amj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102558085 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102558085 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102558085 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amj04147
]
102558085 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
amj00536
]
102558085 (COL4A6)
Exosome [BR:
amj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102558085 (COL4A6)
Glycosaminoglycan binding proteins [BR:
amj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102558085 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102558085
NCBI-ProteinID:
XP_006262732
UniProt:
A0A151NNC2
LinkDB
All DBs
Position
Un
AA seq
1715 aa
AA seq
DB search
MSGGSSMRARAALLLALGLAAELVAAGGKKPYHGPCGGRDCSVGCKCFPEKGARGRPGPI
GTQGPIGAPGFTGPEGLPGAKGEKGAMGPSGPAGQKGDKGPMGVPGFQGINGVPGHPGQP
GPRGLPGLDGCNGTLGSPGVRGEDGLHGIQGPPGRPGLKGAKGEPAYAQGGPKGMKGENG
LPGLDGFSGPKGLPGPAGSAGSIGLPGLQGPRGLLGLPGPKGNMGLGFQGEKGEKGDVGL
PGPPGPPPSTGILEFMGFPKGKQGDQGEPGPKGFPGIIGLPGLPGIGGVGEKGEKGVPGL
PGSRGFSSLDGSDGIPGRKGHPGIPGFPGLDGAEGMKGELGDPGPPGPPIYLDGEGVVIS
GFPGDPGTPGIPGPQGDKGISGLPGLPGAAGVTPFDPDSAGPMGIPGTSGLKGEPGVPGK
VTFGLPGTPGSDGLPGPPGPPGLPGVLRPGQLPDMILEGEPGKPGVPGQRGPPGTTGQRG
YKGEPGDCACDGGVNIPGPRGETGLPGLPGSPGRPGPKGSRGDSGTVGVPGPRGPVASSG
QPGPPGPKGEKGEPYFTTDGGIRGDPGVIGLRGPSGIPGTPGQDGLPGLPGRPGPPGDDG
LGFPGEKGLPGLPGPKGRHGESGPPGIGFPGPIGIRGSPGDPGIDGYPGQPGLPGPPGDC
CCGEEVGKGVLDTEGGITLPCVFPGAFGNPGSPGHPGLPGRKGSKGFPGISGQPGLYGSK
GQLGSPGLVGPPGVPGFPGIRGDQGPQGLPGLDGTDGLPGKAGTPGLAGAKGALGEVIDA
ESGALGEPGRPGFPGDKGLAGEPGFPGLKGVDGRPGLLGIKGEQGNPGLPGIVGVRGPPG
PGGPFGIKGKPGTAGTVGLRGSPGLPGAQGPTGDAGPPGPAGMKGFPGLDGVLGPPGERG
FLGPPGPSGRDGRPGFPGRKGEKGSPGLIGFPGMPGPSGNPGLSGLKGSLGTTGRKGNAG
IPGTSGQKGDRGDPGPPGPPVQKPQELVLALKGDKGDPGLAGLEGFPGPRGDKGFPGTRG
KPGLPGSRGLPSRERGLAGDPGLPGSFGQPGFPGQRGVAGILGFPGMPGESGSEGISGAP
GFPGTTGSIGPKGDRGESLGIPGEPGAKGERGNPGFPGERGKEGPKGEPGYPGSTGTNGL
KGVPGDLGLQGPPGIPGNAGLRGNTGLPGLPGQPGSVGFIGLLGVVGPKGFPGFPGLNGL
NGLPGTKGSPGTPGLSEPGLQGPAGLPGPKGEEGPPGTGIGAPGLPGLKGSSGDMGPPGP
VGLPGLPGALGISIPSDIPGRRGDPGRPGVSGSPGLPGPPGPPGPPGPASDQGDTGIPGV
PGVSGLPGPKGDMGLPGPIGIPGASGLKGARGEPGFMGMPGKDGFPGDAGHPGLKGDTGR
RGPPGLPGAPGLTPKPEEVVVPPGIIGLPGIDGVPGFAGDPGFQGPLGKQGPKGLPGRSG
LKGRDGLSGPHGIVGDPGSPGIPGQQGYEGVSGKPGPIGLPGMPGRSISVGYTLVKHSQS
EQIPPCPIGMNKLWDGYSLLYVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYA
SRNDKSFWLSTTAPIPMMPVTSFQIAQYISRCSVCEAPSQAIAIHSQDITIPQCPAGWRS
LWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTT
VEQNQQFVGAPPSETLKAGQLRTRVSRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcggcagcagcatgcgcgcccgggccgcgctcctgctcgctctcgggctcgcc
gcggagctggtggccgcgggtggaaagaaaccctatcacgggccatgtgggggccgagat
tgcagcgtgggctgcaaatgctttccagagaaaggtgctcggggtcggccagggcctatt
gggacccagggacccataggtgctccaggatttactggaccagaaggcttgccaggggcc
aaaggtgagaaaggggcaatgggcccttctggaccagctggacagaaaggagataagggc
ccaatgggagttcctggatttcaaggcatcaacggggttccagggcaccctggccaacca
ggacccagaggtctacctggccttgatggctgtaatggcactcttgggagtcctggtgtt
cgtggggaggatggacttcatggtatacaggggccacctggccgccctggtctaaaaggt
gcaaaaggagaacctgcttatgctcaaggtggccctaaaggaatgaagggtgaaaatggt
cttcctggattagatgggttttctggtccaaaaggtttgccaggcccagcaggttctgca
ggatctataggattgccaggcttgcagggtccacggggtctgctggggctaccaggacca
aaaggtaacatgggattaggtttccagggggagaaaggagaaaagggagatgtaggactg
ccgggccctccaggtcccccaccatccactggcatcctggagttcatgggatttcctaaa
ggcaaacaaggggatcagggtgagccaggcccaaaaggattccctgggattataggactg
cctggcctgccgggtattggaggtgttggagagaaaggagaaaagggtgtccctggtttg
cctggcagcaggggcttttcatctttggatggatctgatggaattccagggagaaagggt
catccagggatcccaggctttcctgggcttgatggagcagaaggaatgaagggtgaatta
ggtgatcctggtcctccaggtccacccatctatctcgatggtgaaggtgttgtcatctca
ggtttccctggagatcctggaactccaggaatcccaggccctcaaggagataaaggaatt
agtggcttaccaggccttcctggtgctgcaggagttacaccctttgatccagattcagct
ggccccatggggattccaggtacttcaggactgaagggtgaaccaggggtcccaggcaaa
gtaacatttggattaccaggcacaccagggagtgatggccttccaggtccaccaggacct
ccaggattgcctggcgtactacgccctggacagctaccagacatgatactggagggagag
cctggaaaaccaggagtacctggacagcgggggccacctggaactacaggtcaaagggga
tacaaaggagaaccgggtgattgtgcttgtgatggaggagtaaacatacctggccccaga
ggtgaaacaggccttccaggtttaccaggaagtcctggcagacctggaccaaagggctcc
agaggagattcaggcacagtgggtgtcccagggccacgaggcccagtggcttcatctgga
caaccaggtcctccaggtcccaagggagaaaaaggggagccatattttacaacagatggt
ggcatccggggggatcctggtgtgataggacttagaggaccttctggtatcccaggaact
ccaggccaagatggtctcccaggcttgccaggtcgaccaggacctccaggtgatgacggc
ctaggttttccaggtgaaaaaggtctgccaggattacctggtcccaaaggccgtcatggg
gagagtggtcctcctggcattggtttcccaggtcctattggaattcgagggtctccaggt
gacccaggaatagatggatatccaggacagccaggtcttccgggtcctccaggtgactgc
tgctgcggtgaggaggttggtaaaggagtcttagacacagagggaggtatcaccttaccc
tgtgtttttcctggagcatttggtaaccctggatctccaggccacccaggattaccaggt
cgcaaaggcagcaaaggatttccaggtatttcaggccagcctggattatatggatcaaaa
ggacagctaggttctcctgggttagtaggaccaccaggtgttccaggctttcctgggatc
cgaggagatcagggcccacagggacttccaggacttgatgggacagatggtttacctgga
aaggcaggaaccccaggattagcaggtgcaaaaggagcccttggtgaagtgattgatgct
gaaagtggagctctaggtgagcctgggaggcctggattcccaggagataaagggcttgcc
ggggaacctggatttcctggactgaaaggtgtggatggaaggccaggcttactgggcatt
aagggcgaacagggtaatcctggccttccaggcattgttggagtgcgaggacctcctgga
cctgggggtccatttggcattaaaggaaaaccagggacagctggaacagttggcctcaga
ggatcaccagggcttcctggagcacaaggaccgacgggtgatgcaggtcccccaggccct
gctggtatgaaaggcttcccaggtcttgatggtgttctaggacctcctggagaaagagga
ttcctagggccacctgggccttctggtagagatggacgtccaggcttccccggacgaaaa
ggtgaaaagggctcccctggtctgattggcttccctggcatgccaggcccatctggcaac
cctgggctgagtggtttgaaggggagtcttggtacaactggcaggaaaggaaatgctgga
attcctggaacctctggtcaaaaaggtgacaggggtgaccctggcccacctggtccccct
gttcagaagcctcaagaactggtgctggcattgaagggagacaaaggagatcctgggtta
gctggactggaaggattcccaggacctagaggtgataaaggattccctggaacccggggg
aaacctggtctgcctggttcacgtgggctgccaagcagggagagaggcttagcaggtgat
ccaggtctccctggctcctttggacagcctggctttcctggacagagaggagtagctggt
atcctaggattcccaggaatgcctggggaaagtggttcagagggtatctcaggagcacca
ggattcccagggactactggctccattggaccaaagggtgatcgaggggagtcgcttgga
attccaggtgaaccaggagctaaaggagaacgagggaatcctggatttccaggtgaaaga
gggaaagaaggaccaaagggagaaccaggatacccaggaagcactggaacaaatgggctt
aaaggagtcccaggggaccttggccttcaaggaccaccaggaatccctggaaatgctggg
ctgagaggaaacacaggccttccaggtcttccagggcaacctggttctgtaggattcatc
ggacttcttggggttgtggggccaaaaggttttcctgggtttccaggcttaaatggtctg
aacggattgccaggcacaaaagggtcacctggaacaccaggcttaagtgaacctggattg
caaggccctgcaggacttccaggtcccaagggtgaagaaggtcctccaggaactggcata
ggagctccaggactccctgggctgaaaggatcctcaggagacatgggtccacctggccct
gtggggctgcctggtctaccaggagctcttggcatctctattccttctgacatacctggg
agacggggtgatcctggccgtcctggagtcagtgggagtccaggtcttcctggcccccct
ggccccccaggacctcctggcccagcctctgatcaaggtgatacaggcattccaggtgtc
cctggtgtttctggtttgccaggcccaaaaggtgacatggggcttcctgggccaattgga
atcccaggagcttcaggactcaaaggtgcccggggagagccaggttttatggggatgcca
gggaaagatgggtttccaggggatgctggtcaccctgggctgaaaggtgacactggccgt
cgaggtcccccaggtctacctggtgctccaggcctaacaccaaagccagaagaagttgta
gttccccctggtataataggtctgcctgggattgatggtgtccccggttttgctggagat
cctgggtttcagggaccacttgggaagcaaggtccaaaaggtttgccaggcagatctggt
ctgaaaggacgtgatggtttatctggaccacacggcatagttggagatccaggatctcca
ggtatcccaggacaacagggatatgaaggtgtctctggaaagcccggccctatcggtttg
cctggaatgcctggtcggagcataagcgttggatacactttagtgaaacacagccagtca
gaacagatcccaccatgcccaataggaatgaataagctctgggatggttacagcttgtta
tacgtggaggggcaggaaaaggcgcataaccaggaccttggttttgctggctcctgtttg
cctcgcttcagcaccatgccatttatttactgtaacattaacgaagtgtgctactatgcc
agtcgaaatgacaagtccttctggctctccaccactgctcccatccccatgatgcctgtg
accagtttccagattgcacaatacatcagtcgttgctcagtatgtgaagcaccttcccag
gctatcgccatccatagccaggacataaccattccacagtgccctgctggctggcgcagc
ctttggattggatactctttcctcatgcacacagcagctggtgcagaaggaggaggccag
tcccttgtctcacctggctcttgcctggaagatttccgtgctactcctttcatcgaatgc
aacggcgccagaggaacctgccattattttgcaaacaagtacagcttctggctgacaact
gttgagcagaaccagcagtttgttggtgctcctccctcagaaactctgaaagcagggcag
cttcgaacacgagtgagccgttgccaagtatgcatgaagaacttgtag
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integrated database retrieval system
