Alligator mississippiensis (American alligator): 102558085
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Entry
102558085 CDS
T03087
Symbol
COL4A6
Name
(RefSeq) collagen type IV alpha 6 chain
KO
K06237
collagen type IV alpha
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04382
Cornified envelope formation
amj04510
Focal adhesion
amj04512
ECM-receptor interaction
amj04518
Integrin signaling
amj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102558085 (COL4A6)
04518 Integrin signaling
102558085 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102558085 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102558085 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102558085 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amj04147
]
102558085 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
amj00536
]
102558085 (COL4A6)
Exosome [BR:
amj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102558085 (COL4A6)
Glycosaminoglycan binding proteins [BR:
amj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102558085 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102558085
NCBI-ProteinID:
XP_006262732
UniProt:
A0A151NNC2
LinkDB
All DBs
Position
Un
AA seq
1715 aa
AA seq
DB search
MSGGSSMRARAALLLALGLAAELVAAGGKKPYHGPCGGRDCSVGCKCFPEKGARGRPGPI
GTQGPIGAPGFTGPEGLPGAKGEKGAMGPSGPAGQKGDKGPMGVPGFQGINGVPGHPGQP
GPRGLPGLDGCNGTLGSPGVRGEDGLHGIQGPPGRPGLKGAKGEPAYAQGGPKGMKGENG
LPGLDGFSGPKGLPGPAGSAGSIGLPGLQGPRGLLGLPGPKGNMGLGFQGEKGEKGDVGL
PGPPGPPPSTGILEFMGFPKGKQGDQGEPGPKGFPGIIGLPGLPGIGGVGEKGEKGVPGL
PGSRGFSSLDGSDGIPGRKGHPGIPGFPGLDGAEGMKGELGDPGPPGPPIYLDGEGVVIS
GFPGDPGTPGIPGPQGDKGISGLPGLPGAAGVTPFDPDSAGPMGIPGTSGLKGEPGVPGK
VTFGLPGTPGSDGLPGPPGPPGLPGVLRPGQLPDMILEGEPGKPGVPGQRGPPGTTGQRG
YKGEPGDCACDGGVNIPGPRGETGLPGLPGSPGRPGPKGSRGDSGTVGVPGPRGPVASSG
QPGPPGPKGEKGEPYFTTDGGIRGDPGVIGLRGPSGIPGTPGQDGLPGLPGRPGPPGDDG
LGFPGEKGLPGLPGPKGRHGESGPPGIGFPGPIGIRGSPGDPGIDGYPGQPGLPGPPGDC
CCGEEVGKGVLDTEGGITLPCVFPGAFGNPGSPGHPGLPGRKGSKGFPGISGQPGLYGSK
GQLGSPGLVGPPGVPGFPGIRGDQGPQGLPGLDGTDGLPGKAGTPGLAGAKGALGEVIDA
ESGALGEPGRPGFPGDKGLAGEPGFPGLKGVDGRPGLLGIKGEQGNPGLPGIVGVRGPPG
PGGPFGIKGKPGTAGTVGLRGSPGLPGAQGPTGDAGPPGPAGMKGFPGLDGVLGPPGERG
FLGPPGPSGRDGRPGFPGRKGEKGSPGLIGFPGMPGPSGNPGLSGLKGSLGTTGRKGNAG
IPGTSGQKGDRGDPGPPGPPVQKPQELVLALKGDKGDPGLAGLEGFPGPRGDKGFPGTRG
KPGLPGSRGLPSRERGLAGDPGLPGSFGQPGFPGQRGVAGILGFPGMPGESGSEGISGAP
GFPGTTGSIGPKGDRGESLGIPGEPGAKGERGNPGFPGERGKEGPKGEPGYPGSTGTNGL
KGVPGDLGLQGPPGIPGNAGLRGNTGLPGLPGQPGSVGFIGLLGVVGPKGFPGFPGLNGL
NGLPGTKGSPGTPGLSEPGLQGPAGLPGPKGEEGPPGTGIGAPGLPGLKGSSGDMGPPGP
VGLPGLPGALGISIPSDIPGRRGDPGRPGVSGSPGLPGPPGPPGPPGPASDQGDTGIPGV
PGVSGLPGPKGDMGLPGPIGIPGASGLKGARGEPGFMGMPGKDGFPGDAGHPGLKGDTGR
RGPPGLPGAPGLTPKPEEVVVPPGIIGLPGIDGVPGFAGDPGFQGPLGKQGPKGLPGRSG
LKGRDGLSGPHGIVGDPGSPGIPGQQGYEGVSGKPGPIGLPGMPGRSISVGYTLVKHSQS
EQIPPCPIGMNKLWDGYSLLYVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYA
SRNDKSFWLSTTAPIPMMPVTSFQIAQYISRCSVCEAPSQAIAIHSQDITIPQCPAGWRS
LWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTT
VEQNQQFVGAPPSETLKAGQLRTRVSRCQVCMKNL
NT seq
5148 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcggcagcagcatgcgcgcccgggccgcgctcctgctcgctctcgggctcgcc
gcggagctggtggccgcgggtggaaagaaaccctatcacgggccatgtgggggccgagat
tgcagcgtgggctgcaaatgctttccagagaaaggtgctcggggtcggccagggcctatt
gggacccagggacccataggtgctccaggatttactggaccagaaggcttgccaggggcc
aaaggtgagaaaggggcaatgggcccttctggaccagctggacagaaaggagataagggc
ccaatgggagttcctggatttcaaggcatcaacggggttccagggcaccctggccaacca
ggacccagaggtctacctggccttgatggctgtaatggcactcttgggagtcctggtgtt
cgtggggaggatggacttcatggtatacaggggccacctggccgccctggtctaaaaggt
gcaaaaggagaacctgcttatgctcaaggtggccctaaaggaatgaagggtgaaaatggt
cttcctggattagatgggttttctggtccaaaaggtttgccaggcccagcaggttctgca
ggatctataggattgccaggcttgcagggtccacggggtctgctggggctaccaggacca
aaaggtaacatgggattaggtttccagggggagaaaggagaaaagggagatgtaggactg
ccgggccctccaggtcccccaccatccactggcatcctggagttcatgggatttcctaaa
ggcaaacaaggggatcagggtgagccaggcccaaaaggattccctgggattataggactg
cctggcctgccgggtattggaggtgttggagagaaaggagaaaagggtgtccctggtttg
cctggcagcaggggcttttcatctttggatggatctgatggaattccagggagaaagggt
catccagggatcccaggctttcctgggcttgatggagcagaaggaatgaagggtgaatta
ggtgatcctggtcctccaggtccacccatctatctcgatggtgaaggtgttgtcatctca
ggtttccctggagatcctggaactccaggaatcccaggccctcaaggagataaaggaatt
agtggcttaccaggccttcctggtgctgcaggagttacaccctttgatccagattcagct
ggccccatggggattccaggtacttcaggactgaagggtgaaccaggggtcccaggcaaa
gtaacatttggattaccaggcacaccagggagtgatggccttccaggtccaccaggacct
ccaggattgcctggcgtactacgccctggacagctaccagacatgatactggagggagag
cctggaaaaccaggagtacctggacagcgggggccacctggaactacaggtcaaagggga
tacaaaggagaaccgggtgattgtgcttgtgatggaggagtaaacatacctggccccaga
ggtgaaacaggccttccaggtttaccaggaagtcctggcagacctggaccaaagggctcc
agaggagattcaggcacagtgggtgtcccagggccacgaggcccagtggcttcatctgga
caaccaggtcctccaggtcccaagggagaaaaaggggagccatattttacaacagatggt
ggcatccggggggatcctggtgtgataggacttagaggaccttctggtatcccaggaact
ccaggccaagatggtctcccaggcttgccaggtcgaccaggacctccaggtgatgacggc
ctaggttttccaggtgaaaaaggtctgccaggattacctggtcccaaaggccgtcatggg
gagagtggtcctcctggcattggtttcccaggtcctattggaattcgagggtctccaggt
gacccaggaatagatggatatccaggacagccaggtcttccgggtcctccaggtgactgc
tgctgcggtgaggaggttggtaaaggagtcttagacacagagggaggtatcaccttaccc
tgtgtttttcctggagcatttggtaaccctggatctccaggccacccaggattaccaggt
cgcaaaggcagcaaaggatttccaggtatttcaggccagcctggattatatggatcaaaa
ggacagctaggttctcctgggttagtaggaccaccaggtgttccaggctttcctgggatc
cgaggagatcagggcccacagggacttccaggacttgatgggacagatggtttacctgga
aaggcaggaaccccaggattagcaggtgcaaaaggagcccttggtgaagtgattgatgct
gaaagtggagctctaggtgagcctgggaggcctggattcccaggagataaagggcttgcc
ggggaacctggatttcctggactgaaaggtgtggatggaaggccaggcttactgggcatt
aagggcgaacagggtaatcctggccttccaggcattgttggagtgcgaggacctcctgga
cctgggggtccatttggcattaaaggaaaaccagggacagctggaacagttggcctcaga
ggatcaccagggcttcctggagcacaaggaccgacgggtgatgcaggtcccccaggccct
gctggtatgaaaggcttcccaggtcttgatggtgttctaggacctcctggagaaagagga
ttcctagggccacctgggccttctggtagagatggacgtccaggcttccccggacgaaaa
ggtgaaaagggctcccctggtctgattggcttccctggcatgccaggcccatctggcaac
cctgggctgagtggtttgaaggggagtcttggtacaactggcaggaaaggaaatgctgga
attcctggaacctctggtcaaaaaggtgacaggggtgaccctggcccacctggtccccct
gttcagaagcctcaagaactggtgctggcattgaagggagacaaaggagatcctgggtta
gctggactggaaggattcccaggacctagaggtgataaaggattccctggaacccggggg
aaacctggtctgcctggttcacgtgggctgccaagcagggagagaggcttagcaggtgat
ccaggtctccctggctcctttggacagcctggctttcctggacagagaggagtagctggt
atcctaggattcccaggaatgcctggggaaagtggttcagagggtatctcaggagcacca
ggattcccagggactactggctccattggaccaaagggtgatcgaggggagtcgcttgga
attccaggtgaaccaggagctaaaggagaacgagggaatcctggatttccaggtgaaaga
gggaaagaaggaccaaagggagaaccaggatacccaggaagcactggaacaaatgggctt
aaaggagtcccaggggaccttggccttcaaggaccaccaggaatccctggaaatgctggg
ctgagaggaaacacaggccttccaggtcttccagggcaacctggttctgtaggattcatc
ggacttcttggggttgtggggccaaaaggttttcctgggtttccaggcttaaatggtctg
aacggattgccaggcacaaaagggtcacctggaacaccaggcttaagtgaacctggattg
caaggccctgcaggacttccaggtcccaagggtgaagaaggtcctccaggaactggcata
ggagctccaggactccctgggctgaaaggatcctcaggagacatgggtccacctggccct
gtggggctgcctggtctaccaggagctcttggcatctctattccttctgacatacctggg
agacggggtgatcctggccgtcctggagtcagtgggagtccaggtcttcctggcccccct
ggccccccaggacctcctggcccagcctctgatcaaggtgatacaggcattccaggtgtc
cctggtgtttctggtttgccaggcccaaaaggtgacatggggcttcctgggccaattgga
atcccaggagcttcaggactcaaaggtgcccggggagagccaggttttatggggatgcca
gggaaagatgggtttccaggggatgctggtcaccctgggctgaaaggtgacactggccgt
cgaggtcccccaggtctacctggtgctccaggcctaacaccaaagccagaagaagttgta
gttccccctggtataataggtctgcctgggattgatggtgtccccggttttgctggagat
cctgggtttcagggaccacttgggaagcaaggtccaaaaggtttgccaggcagatctggt
ctgaaaggacgtgatggtttatctggaccacacggcatagttggagatccaggatctcca
ggtatcccaggacaacagggatatgaaggtgtctctggaaagcccggccctatcggtttg
cctggaatgcctggtcggagcataagcgttggatacactttagtgaaacacagccagtca
gaacagatcccaccatgcccaataggaatgaataagctctgggatggttacagcttgtta
tacgtggaggggcaggaaaaggcgcataaccaggaccttggttttgctggctcctgtttg
cctcgcttcagcaccatgccatttatttactgtaacattaacgaagtgtgctactatgcc
agtcgaaatgacaagtccttctggctctccaccactgctcccatccccatgatgcctgtg
accagtttccagattgcacaatacatcagtcgttgctcagtatgtgaagcaccttcccag
gctatcgccatccatagccaggacataaccattccacagtgccctgctggctggcgcagc
ctttggattggatactctttcctcatgcacacagcagctggtgcagaaggaggaggccag
tcccttgtctcacctggctcttgcctggaagatttccgtgctactcctttcatcgaatgc
aacggcgccagaggaacctgccattattttgcaaacaagtacagcttctggctgacaact
gttgagcagaaccagcagtttgttggtgctcctccctcagaaactctgaaagcagggcag
cttcgaacacgagtgagccgttgccaagtatgcatgaagaacttgtag
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integrated database retrieval system
